Hi Fereshte
mris_volumes computes and prints the volume of the interior of a closed
surface (a single number). It does not fill the interior. For that, use
mris_fill
cheers
Bruce
On Tue, 19 Sep 2017, Fereshte wrote:
Dear Professor Bruce
I'm just trying to convert lh.pial surface to the volume with the down below
command but the output
doesn't make any sense ( lh.voulme contains zero). Could you please help?
Mris_volume topo_defect_after/surf/rh.pial
Thank you!
On Tue, Sep 19, 2017 at 1:11 PM Fereshte <fereshte.ramez...@gmail.com> wrote:
On Tue, Sep 19, 2017 at 11:51 AM Fereshte <fereshte.ramez...@gmail.com>
wrote:
I changed the FreeSurfer version to 6 and now i could find it.
Thank you!
Cheers
On Sat, Sep 16, 2017 at 9:21 PM Douglas Greve <gr...@nmr.mgh.harvard.edu> wrote:
Is it not in $FREESURFER_HOME/bin ? What version are you using?
On 9/16/17 12:05 PM, Fereshte wrote:
Well i did ask if it was possible to obtain the volume of Pial surface
and here's the response;
"sure, mris_volume will give you the interior volume of any closed surface
using the divergence formula. Note that this is *not* the volume of the
ribbon but rather the volume of the entire interior"
I can't see mris_volume in FreeSurfer commands.
On Sat, Sep 16, 2017 at 8:09 PM Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
sorry, can you clarify what your question is?
On Sat, 16 Sep 2017, Fereshte
wrote:
> Dear FreeSurfer developers
> I couldn't find the mentioned mris_volume in the commands.
Shall i use mri_vol2surf or something?
> Looking forward to hearing from you!
> On Tue, Sep 5, 2017 at 9:46 AM Fereshte
<fereshte.ramez...@gmail.com> wrote:
> Hi Bruce,
> Thank you for your replies.
> Cheers
>
> On Tue, Sep 5, 2017 at 4:52 AM Bruce Fischl
<fis...@nmr.mgh.harvard.edu> wrote:
> Hi Fereshte
>
> the algorithm is documented in the recon1 1999
NeuroImage and 2000 PNAS
> papers
>
> cheers
> Bruce
> On Mon, 4 Sep 2017, Fereshte wrote:
>
> > What's the algorithm used to expand inner cortical
boundary ( to achieve the
> outer cortical boundary
> > in pial surface) in FreeSurfer?
> > On Mon, Sep 4, 2017 at 9:58 PM Bruce Fischl
<fis...@nmr.mgh.harvard.edu> wrote:
> > it will give the interior volume of whatever
surface you give it as a
> > command line argument.
> >
> > On Mon, 4 Sep 2017, Fereshte
> > wrote:
> >
> > > Using the Pial surface; Does it mean
mris_volume will give the inner
> cortical boundary
> > of the
> > > surface and not the outer boundary?
> > > Sincerely,
> > > Fereshte Ramezani
> > > On Mon, Sep 4, 2017 at 9:53 PM Fereshte
<fereshte.ramez...@gmail.com>
> wrote:
> > >
> > > On Mon, Sep 4, 2017 at 6:46 PM Bruce
Fischl
> <fis...@nmr.mgh.harvard.edu> wrote:
> > > sure, mris_volume will give you the
interior volume of any closed
> surface
> > > using the divergence formula. Note that
this is *not* the volume
> of the
> > > ribbon but rather the volume of the
entire interior
> > >
> > > cheers
> > > Bruce
> > >
> > >
> > > On Mon, 4 Sep 2017, Fereshte wrote:
> > >
> > > > Hello FreeSurfer developersIs it
possible to have the volume of
> pial surface
> > in
> > > FreeSurfer?
> > > >
> > >
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