Well i did ask if it was possible to obtain the volume of Pial surface and here's the response;
"sure, mris_volume will give you the interior volume of any closed surface using the divergence formula. Note that this is *not* the volume of the ribbon but rather the volume of the entire interior" I can't see mris_volume in FreeSurfer commands. On Sat, Sep 16, 2017 at 8:09 PM Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > sorry, can you clarify what your question is? > > On Sat, 16 Sep 2017, Fereshte > wrote: > > > Dear FreeSurfer developers > > I couldn't find the mentioned mris_volume in the commands. Shall i use > mri_vol2surf or something? > > Looking forward to hearing from you! > > On Tue, Sep 5, 2017 at 9:46 AM Fereshte <fereshte.ramez...@gmail.com> > wrote: > > Hi Bruce, > > Thank you for your replies. > > Cheers > > > > On Tue, Sep 5, 2017 at 4:52 AM Bruce Fischl <fis...@nmr.mgh.harvard.edu> > wrote: > > Hi Fereshte > > > > the algorithm is documented in the recon1 1999 NeuroImage and 2000 > PNAS > > papers > > > > cheers > > Bruce > > On Mon, 4 Sep 2017, Fereshte wrote: > > > > > What's the algorithm used to expand inner cortical boundary ( to > achieve the > > outer cortical boundary > > > in pial surface) in FreeSurfer? > > > On Mon, Sep 4, 2017 at 9:58 PM Bruce Fischl < > fis...@nmr.mgh.harvard.edu> wrote: > > > it will give the interior volume of whatever surface you > give it as a > > > command line argument. > > > > > > On Mon, 4 Sep 2017, Fereshte > > > wrote: > > > > > > > Using the Pial surface; Does it mean mris_volume will > give the inner > > cortical boundary > > > of the > > > > surface and not the outer boundary? > > > > Sincerely, > > > > Fereshte Ramezani > > > > On Mon, Sep 4, 2017 at 9:53 PM Fereshte < > fereshte.ramez...@gmail.com> > > wrote: > > > > > > > > On Mon, Sep 4, 2017 at 6:46 PM Bruce Fischl > > <fis...@nmr.mgh.harvard.edu> wrote: > > > > sure, mris_volume will give you the interior > volume of any closed > > surface > > > > using the divergence formula. Note that this is > *not* the volume > > of the > > > > ribbon but rather the volume of the entire interior > > > > > > > > cheers > > > > Bruce > > > > > > > > > > > > On Mon, 4 Sep 2017, Fereshte wrote: > > > > > > > > > Hello FreeSurfer developersIs it possible to > have the volume of > > pial surface > > > in > > > > FreeSurfer? > > > > > > > > > >_______________________________________________ > > > > Freesurfer mailing list > > > > Freesurfer@nmr.mgh.harvard.edu > > > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > > > > The information in this e-mail is intended only > for the person to > > whom it is > > > > addressed. If you believe this e-mail was sent to > you in error and > > the e-mail > > > > contains patient information, please contact the > Partners > > Compliance HelpLine at > > > > http://www.partners.org/complianceline . If the > e-mail was sent to > > you in error > > > > but does not contain patient information, please > contact the > > sender and properly > > > > dispose of the e-mail. > > > > > > > > > > > >_______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu > > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > The information in this e-mail is intended only for the > person to whom it > > is > > > addressed. If you believe this e-mail was sent to you in > error and the > > e-mail > > > contains patient information, please contact the Partners > Compliance > > HelpLine at > > > http://www.partners.org/complianceline . If the e-mail > was sent to you in > > error > > > but does not contain patient information, please contact > the sender and > > properly > > > dispose of the e-mail. > > > > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to > whom it is > > addressed. If you believe this e-mail was sent to you in error and > the e-mail > > contains patient information, please contact the Partners > Compliance HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent > to you in error > > but does not contain patient information, please contact the > sender and properly > > dispose of the e-mail. > > > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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