Dear FreeSurfer developers I couldn't find the mentioned mris_volume in the commands. Shall i use mri_vol2surf or something? Looking forward to hearing from you! On Tue, Sep 5, 2017 at 9:46 AM Fereshte <fereshte.ramez...@gmail.com> wrote:
> Hi Bruce, > Thank you for your replies. > Cheers > > On Tue, Sep 5, 2017 at 4:52 AM Bruce Fischl <fis...@nmr.mgh.harvard.edu> > wrote: > >> Hi Fereshte >> >> the algorithm is documented in the recon1 1999 NeuroImage and 2000 PNAS >> papers >> >> cheers >> Bruce >> On Mon, 4 Sep 2017, Fereshte wrote: >> >> > What's the algorithm used to expand inner cortical boundary ( to >> achieve the outer cortical boundary >> > in pial surface) in FreeSurfer? >> > On Mon, Sep 4, 2017 at 9:58 PM Bruce Fischl <fis...@nmr.mgh.harvard.edu> >> wrote: >> > it will give the interior volume of whatever surface you give it >> as a >> > command line argument. >> > >> > On Mon, 4 Sep 2017, Fereshte >> > wrote: >> > >> > > Using the Pial surface; Does it mean mris_volume will give the >> inner cortical boundary >> > of the >> > > surface and not the outer boundary? >> > > Sincerely, >> > > Fereshte Ramezani >> > > On Mon, Sep 4, 2017 at 9:53 PM Fereshte < >> fereshte.ramez...@gmail.com> wrote: >> > > >> > > On Mon, Sep 4, 2017 at 6:46 PM Bruce Fischl < >> fis...@nmr.mgh.harvard.edu> wrote: >> > > sure, mris_volume will give you the interior volume of >> any closed surface >> > > using the divergence formula. Note that this is *not* the >> volume of the >> > > ribbon but rather the volume of the entire interior >> > > >> > > cheers >> > > Bruce >> > > >> > > >> > > On Mon, 4 Sep 2017, Fereshte wrote: >> > > >> > > > Hello FreeSurfer developersIs it possible to have the >> volume of pial surface >> > in >> > > FreeSurfer? >> > > > >> > > >_______________________________________________ >> > > Freesurfer mailing list >> > > Freesurfer@nmr.mgh.harvard.edu >> > > >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > > >> > > >> > > The information in this e-mail is intended only for the >> person to whom it is >> > > addressed. If you believe this e-mail was sent to you in >> error and the e-mail >> > > contains patient information, please contact the Partners >> Compliance HelpLine at >> > > http://www.partners.org/complianceline . If the e-mail >> was sent to you in error >> > > but does not contain patient information, please contact >> the sender and properly >> > > dispose of the e-mail. >> > > >> > > >> > >_______________________________________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > >> > >> > The information in this e-mail is intended only for the person to >> whom it is >> > addressed. If you believe this e-mail was sent to you in error >> and the e-mail >> > contains patient information, please contact the Partners >> Compliance HelpLine at >> > http://www.partners.org/complianceline . If the e-mail was sent >> to you in error >> > but does not contain patient information, please contact the >> sender and properly >> > dispose of the e-mail. >> > >> > >> >_______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >
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