Ok. Thank you!

2017-04-11 13:56 GMT-04:00 Douglas N Greve <gr...@nmr.mgh.harvard.edu>:

> No. qdec is not being developed any more, so don't expect it to change any
> time soon
>
>
> On 04/11/2017 01:14 PM, Arnaud Boré wrote:
>
>> Do you know somebody who can tell us if qdec should be fixed or if it's a
>> normal behaviour ?
>>
>> 2017-04-11 12:39 GMT-04:00 Douglas N Greve <gr...@nmr.mgh.harvard.edu
>> <mailto:gr...@nmr.mgh.harvard.edu>>:
>>
>>     We don't use qdec in this way, so I don't know.
>>
>>
>>     On 04/11/2017 12:38 PM, Arnaud Boré wrote:
>>     > Is that normal ?
>>     >
>>     > Le 11 avr. 2017 12:34 PM, "Douglas N Greve"
>>     <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>
>>     > <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>> a écrit :
>>     >
>>     >     Yes, the label is shifted off the brain when I run that command
>>     >
>>     >
>>     >
>>     >     On 04/11/2017 10:13 AM, Arnaud Boré wrote:
>>     >
>>     >         Hi Douglas,
>>     >
>>     >         Yes I would like to draw ROIs, I understand I can use
>>     tksurfer.
>>     >         I would like to know if your fs version has the same
>>     behaviour
>>     >         as mine. I use:
>>     >         freesurfer-x86_64-unknown-linux-gnu-stable6-20170118
>>     >         Can you replicate this command line and tell me if the label
>>     >         is well aligned to the surface ?
>>     >         qdec --surface $SUBJECTS_DIR/bert/surf/rh.pial --label
>>     >         $SUBJECTS_DIR/bert/label/rh.V1_exvivo.label
>>     >
>>     >         Thank you in advance
>>     >         Arnaud
>>     >
>>     >         2017-04-10 11:54 GMT-04:00 Douglas N Greve
>>     >         <gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu <mailto:
>> gr...@nmr.mgh.harvard.edu>>>>:
>>     >
>>     >
>>     >             Sorry, I don't know what is going on with qdec. Why
>>     do you
>>     >         need to
>>     >             do this in qdec? If it is to draw labels, then you can
>>     >         also use
>>     >             tksurfer.
>>     >
>>     >
>>     >             On 04/10/2017 11:34 AM, Arnaud Boré wrote:
>>     >
>>     >                 Hi Douglas,
>>     >                 What more can I do to help you figure out what's
>>     wrong ?
>>     >                 Thank you in advance
>>     >                 Arnaud
>>     >
>>     >                 2017-04-07 16:50 GMT-04:00 Arnaud Boré
>>     >         <arnaud.b...@gmail.com <mailto:arnaud.b...@gmail.com>
>>     <mailto:arnaud.b...@gmail.com <mailto:arnaud.b...@gmail.com>>
>>     >                 <mailto:arnaud.b...@gmail.com
>>     <mailto:arnaud.b...@gmail.com>
>>     >         <mailto:arnaud.b...@gmail.com
>>     <mailto:arnaud.b...@gmail.com>>> <mailto:arnaud.b...@gmail.com
>>     <mailto:arnaud.b...@gmail.com>
>>     >         <mailto:arnaud.b...@gmail.com
>>     <mailto:arnaud.b...@gmail.com>>
>>     >
>>     >                 <mailto:arnaud.b...@gmail.com
>>     <mailto:arnaud.b...@gmail.com>
>>     >         <mailto:arnaud.b...@gmail.com <mailto:arnaud.b...@gmail.com
>> >>>>>:
>>     >
>>     >                     There is no shift in freeview.
>>     >
>>     >                     2017-04-07 16:35 GMT-04:00 Douglas N Greve
>>     >                     <gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>
>>     >                 <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>>
>>     >                 <mailto:gr...@nmr.mgh.harvard.edu <mailto:
>> gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>
>>     >
>>     >                 <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>>>>:
>>     >
>>     >                         Not yet. Did you try to load it into
>>     freeview?
>>     >         If so,
>>     >                 do you
>>     >                         still see the shift?
>>     >
>>     >
>>     >                         On 04/07/2017 04:14 PM, Arnaud Boré wrote:
>>     >
>>     >                             Do you want me to attach/upload a
>>     >         screenshot of
>>     >                 the shift ?
>>     >
>>     >                             2017-04-07 13:10 GMT-04:00 Arnaud Boré
>>     >                             <arnaud.b...@gmail.com
>>     <mailto:arnaud.b...@gmail.com>
>>     >         <mailto:arnaud.b...@gmail.com
>>     <mailto:arnaud.b...@gmail.com>>
>>     >                 <mailto:arnaud.b...@gmail.com
>>     <mailto:arnaud.b...@gmail.com>
>>     >         <mailto:arnaud.b...@gmail.com
>>     <mailto:arnaud.b...@gmail.com>>> <mailto:arnaud.b...@gmail.com
>>     <mailto:arnaud.b...@gmail.com>
>>     >         <mailto:arnaud.b...@gmail.com
>>     <mailto:arnaud.b...@gmail.com>>
>>     >                 <mailto:arnaud.b...@gmail.com
>>     <mailto:arnaud.b...@gmail.com>
>>     >         <mailto:arnaud.b...@gmail.com
>>     <mailto:arnaud.b...@gmail.com>>>>
>>     >                             <mailto:arnaud.b...@gmail.com
>>     <mailto:arnaud.b...@gmail.com>
>>     >         <mailto:arnaud.b...@gmail.com
>>     <mailto:arnaud.b...@gmail.com>>
>>     >                 <mailto:arnaud.b...@gmail.com
>>     <mailto:arnaud.b...@gmail.com>
>>     >         <mailto:arnaud.b...@gmail.com
>>     <mailto:arnaud.b...@gmail.com>>>
>>     >                             <mailto:arnaud.b...@gmail.com
>>     <mailto:arnaud.b...@gmail.com>
>>     >         <mailto:arnaud.b...@gmail.com
>>     <mailto:arnaud.b...@gmail.com>>
>>     >                 <mailto:arnaud.b...@gmail.com
>>     <mailto:arnaud.b...@gmail.com>
>>     >         <mailto:arnaud.b...@gmail.com
>>     <mailto:arnaud.b...@gmail.com>>>>>>:
>>     >
>>     >                                 I try to view it on O_Nap_04MB.
>>     >
>>     >                                 I've tried these two command lines:
>>     >                                 qdec --table
>>     qdec.all_subjs.table.dat
>>     >         --surface
>>     >  O_Nap_04MB/surf/rh.pial --label
>>     >  O_Nap_04MB/label/rh.M1_v4.label
>>     >                                 qdec --table
>>     qdec.all_subjs.table.dat
>>     >                 --average O_Nap_04MB
>>     >                                 --surface
>>     O_Nap_04MB/surf/rh.pial --label
>>     >  O_Nap_04MB/label/rh.M1_v4.label
>>     >
>>     >                                 I get the same results.
>>     >
>>     >
>>     >                                 2017-04-07 12:03 GMT-04:00
>>     Douglas N Greve
>>     >                                 <gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>
>>     >                 <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>>
>>     >                             <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>
>>     >                 <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>>>
>>     >                             <mailto:gr...@nmr.mgh.harvard.edu
>> <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>
>>     >                 <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>>
>>     >
>>     >                             <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>
>>     >                 <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>>>>>:
>>     >
>>     >                                     when you view it in qdec,
>>     are you
>>     >         viewing
>>     >                 it on
>>     >                             fsaverage or
>>     >                                     on O_Nap_04MB ?
>>     >
>>     >
>>     >                                     On 04/07/2017 11:47 AM, Arnaud
>>     >         Boré wrote:
>>     >
>>     >                                         I used this command line:
>>     >         mri_label2label
>>     >                             --srclabel
>>     >  rh.M1_v4.label --srcsubject
>>     >         fsaverage
>>     >                 --trgsubject
>>     >                                         O_Nap_04MB --trglabel
>>     >         rh.M1_v4.label
>>     >                             --regmethod surface
>>     >                                         --hemi rh
>>     >                                         The output label
>>     overlaps the
>>     >         surface
>>     >                 using
>>     >                             freeview but
>>     >                                         using qdec it is shifted.
>>     >                                         Thank you for your help.
>>     >                                         Arnaud
>>     >
>>     >                                         2017-04-07 10:23 GMT-04:00
>>     >         basile pinsard
>>     >                                            <
>> basile.pins...@gmail.com <mailto:basile.pins...@gmail.com>
>>     >         <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>>
>>     >                 <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>
>>     >         <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>>>
>>     >                             <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>
>>     >         <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>>
>>     >                 <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>
>>     >         <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>>>>
>>     >
>>     >         <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com> <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>>
>>     >                 <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>
>>     >         <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>>>
>>     >                             <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>
>>     >         <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>>
>>     >                 <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>
>>     >         <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>>>>>
>>     >
>>     >         <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com> <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>>
>>     >                 <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>
>>     >         <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>>>
>>     >                             <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>
>>     >         <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>>
>>     >                 <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>
>>     >         <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>>>>
>>     >
>>     >         <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com> <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>>
>>     >                 <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>
>>     >         <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>>>
>>     >                             <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>
>>     >         <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>>
>>     >                 <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>
>>     >         <mailto:basile.pins...@gmail.com
>>     <mailto:basile.pins...@gmail.com>>>>>>>:
>>     >
>>     >
>>     >  ---------- Forwarded message
>>     >                 ----------
>>     >                                             From: *Douglas N Greve*
>>     >                             <gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>
>>     >                 <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>>
>>     >                 <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>
>>     >                 <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>>>
>>     >
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>
>>     >                 <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>>
>>     >                             <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>
>>     >                 <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>>>>
>>     >
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>
>>     >                 <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>>
>>     >                             <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>
>>     >                 <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>>>
>>     >
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>
>>     >                 <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>>
>>     >                             <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>
>>     >                 <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>>>>>>
>>     >                                             Date: Thu, Apr 6,
>>     2017 at
>>     >         4:53 PM
>>     >  Subject: Re: [Freesurfer]
>>     >         QDEC and
>>     >                 ROI drawing
>>     >                                             To:
>>     > freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>>
>>     >                 <mailto:freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>>>
>>     >                                <mailto:freesur...@nmr.mgh.har
>> vard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>>
>>     >                 <mailto:freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>>>>
>>     >
>>     >         <mailto:freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>>
>>     >                 <mailto:freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>>>
>>     >                                <mailto:freesur...@nmr.mgh.har
>> vard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>>
>>     >                 <mailto:freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>>>>>
>>     >
>>     >          <mailto:freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>>
>>     >                 <mailto:freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>>>
>>     >                                <mailto:freesur...@nmr.mgh.har
>> vard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>>
>>     >                 <mailto:freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>>>>
>>     >
>>     >         <mailto:freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>>
>>     >                 <mailto:freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>>>
>>     >                                <mailto:freesur...@nmr.mgh.har
>> vard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>>
>>     >                 <mailto:freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:freesurfer@nmr.mgh.harvard.edu
>>     <mailto:freesurfer@nmr.mgh.harvard.edu>>>>>>
>>     >
>>     >
>>     >                                             what is your label2label
>>     >         command line?
>>     >
>>     >
>>     >
>>     >                                             On 04/06/2017 04:52
>>     PM, Arnaud
>>     >                 Boré wrote:
>>     >                                             > Dear Freesurfer's
>>     experts,
>>     >                                             > I draw a specific
>>     region on
>>     >                 fsaverage
>>     >                             using QDEC,
>>     >                                         then I mapped this
>>     >                                             > label on each
>>     subject using
>>     >                             mri_label2label. I
>>     >                                         looked at these
>>     >                                             > registered labels
>>     using
>>     >                 freeview. Most
>>     >                             of them are
>>     >                                         perfect but for
>>     >                                             > some of them I
>>     would like to
>>     >                 correct the
>>     >  segmentation. I would
>>     >                                             like to
>>     >                                             > modify it using
>>     QDEC but
>>     >         when I
>>     >                 overlay
>>     >                             this label
>>     >                                         on the surface of
>>     >                                             > my subject it has been
>>     >         shifted.
>>     >                 I think
>>     >                             this shift
>>     >                                         is because
>>     >                                             QDEC is
>>     >                                             > using fsaverage as the
>>     >         standard
>>     >                 space. I
>>     >                             try opening
>>     >                                         QDEC using the
>>     >                                             > "average" option
>>     and use the
>>     >                 subject I
>>     >                             want but I
>>     >                                         still get this
>>     >                                             > shift. am I missing
>>     >         something ?
>>     >                                             > Thank you in
>>     advance for
>>     >         your help.
>>     >                                             > Arnaud Bore
>>     >                                             >
>>     >                                             >
>>     >                                             >
>>     >                                             >
>>     >
>>     >         _______________________________________________
>>     >                                             > Freesurfer mailing
>>     list
>>     >                                             >
>>     > Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>>
>>     >                 <mailto:Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>>     >                                <mailto:freesur...@nmr.mgh.har
>> vard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>>
>>     >                 <mailto:Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
>>     >
>>     >         <mailto:Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>>
>>     >                 <mailto:Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>>     >                                <mailto:freesur...@nmr.mgh.har
>> vard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>>
>>     >                 <mailto:Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>>
>>     >
>>     >          <mailto:Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>>
>>     >                 <mailto:Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>>     >                                <mailto:freesur...@nmr.mgh.har
>> vard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>>
>>     >                 <mailto:Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
>>     >
>>     >         <mailto:Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>>
>>     >                 <mailto:Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>>     >                                <mailto:freesur...@nmr.mgh.har
>> vard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>>
>>     >                 <mailto:Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>     >         <mailto:Freesurfer@nmr.mgh.harvard.edu
>>     <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>>>
>>     >                                             >
>>     > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>>     >            <https://mail.nmr.mgh.harvard.
>> edu/mailman/listinfo/freesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>>     >
>>     >            <https://mail.nmr.mgh.harvard.
>> edu/mailman/listinfo/freesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>>     >            <https://mail.nmr.mgh.harvard.
>> edu/mailman/listinfo/freesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
>>     >
>>     >             <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f
>> reesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>>     >            <https://mail.nmr.mgh.harvard.
>> edu/mailman/listinfo/freesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>>     >
>>     >            <https://mail.nmr.mgh.harvard.
>> edu/mailman/listinfo/freesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>>     >            <https://mail.nmr.mgh.harvard.
>> edu/mailman/listinfo/freesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>
>>     >
>>     >            <https://mail.nmr.mgh.harvard.
>> edu/mailman/listinfo/freesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>>     >            <https://mail.nmr.mgh.harvard.
>> edu/mailman/listinfo/freesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>>     >
>>     >            <https://mail.nmr.mgh.harvard.
>> edu/mailman/listinfo/freesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>>     >            <https://mail.nmr.mgh.harvard.
>> edu/mailman/listinfo/freesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
>>     >
>>     >             <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f
>> reesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>>     >            <https://mail.nmr.mgh.harvard.
>> edu/mailman/listinfo/freesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>>     >
>>     >            <https://mail.nmr.mgh.harvard.
>> edu/mailman/listinfo/freesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>>     >            <https://mail.nmr.mgh.harvard.
>> edu/mailman/listinfo/freesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>>
>>     >
>>     >             <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f
>> reesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>>     >            <https://mail.nmr.mgh.harvard.
>> edu/mailman/listinfo/freesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>>     >
>>     >            <https://mail.nmr.mgh.harvard.
>> edu/mailman/listinfo/freesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>>     >            <https://mail.nmr.mgh.harvard.
>> edu/mailman/listinfo/freesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
>>     >
>>     >             <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f
>> reesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>>     >            <https://mail.nmr.mgh.harvard.
>> edu/mailman/listinfo/freesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>>     >
>>     >            <https://mail.nmr.mgh.harvard.
>> edu/mailman/listinfo/freesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>>     >            <https://mail.nmr.mgh.harvard.
>> edu/mailman/listinfo/freesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>
>>     >
>>     >            <https://mail.nmr.mgh.harvard.
>> edu/mailman/listinfo/freesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>>     >            <https://mail.nmr.mgh.harvard.
>> edu/mailman/listinfo/freesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>>     >
>>     >            <https://mail.nmr.mgh.harvard.
>> edu/mailman/listinfo/freesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>>     >            <https://mail.nmr.mgh.harvard.
>> edu/mailman/listinfo/freesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
>>     >
>>     >             <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f
>> reesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>>     >            <https://mail.nmr.mgh.harvard.
>> edu/mailman/listinfo/freesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>>     >
>>     >            <https://mail.nmr.mgh.harvard.
>> edu/mailman/listinfo/freesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>>     >            <https://mail.nmr.mgh.harvard.
>> edu/mailman/listinfo/freesurfer
>>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>>>>
>>     >
>>     >                                             --
>>     >                                             Douglas N. Greve, Ph.D.
>>     >                                             MGH-NMR Center
>>     > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>
>>     <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>>
>>     >                 <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>
>>     >                 <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>>     <mailto:gr...@nmr.mgh.harvard.edu>>>>
>>     >
>>     >         <mailto:gr...@nmr.mgh.harvard.edu
>
>


-- 
Arnaud BORE
Research assistant
Cellulaire : (001) 514-647-8649
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