Do you want me to attach/upload a screenshot of the shift ? 2017-04-07 13:10 GMT-04:00 Arnaud Boré <arnaud.b...@gmail.com>:
> I try to view it on O_Nap_04MB. > > I've tried these two command lines: > qdec --table qdec.all_subjs.table.dat --surface O_Nap_04MB/surf/rh.pial > --label O_Nap_04MB/label/rh.M1_v4.label > qdec --table qdec.all_subjs.table.dat --average O_Nap_04MB --surface > O_Nap_04MB/surf/rh.pial --label O_Nap_04MB/label/rh.M1_v4.label > > I get the same results. > > > 2017-04-07 12:03 GMT-04:00 Douglas N Greve <gr...@nmr.mgh.harvard.edu>: > >> when you view it in qdec, are you viewing it on fsaverage or on >> O_Nap_04MB ? >> >> >> On 04/07/2017 11:47 AM, Arnaud Boré wrote: >> >>> I used this command line: mri_label2label --srclabel rh.M1_v4.label >>> --srcsubject fsaverage --trgsubject O_Nap_04MB --trglabel rh.M1_v4.label >>> --regmethod surface --hemi rh >>> The output label overlaps the surface using freeview but using qdec it >>> is shifted. >>> Thank you for your help. >>> Arnaud >>> >>> 2017-04-07 10:23 GMT-04:00 basile pinsard <basile.pins...@gmail.com >>> <mailto:basile.pins...@gmail.com>>: >>> >>> >>> ---------- Forwarded message ---------- >>> From: *Douglas N Greve* <gr...@nmr.mgh.harvard.edu >>> <mailto:gr...@nmr.mgh.harvard.edu>> >>> Date: Thu, Apr 6, 2017 at 4:53 PM >>> Subject: Re: [Freesurfer] QDEC and ROI drawing >>> To: freesurfer@nmr.mgh.harvard.edu >>> <mailto:freesurfer@nmr.mgh.harvard.edu> >>> >>> >>> what is your label2label command line? >>> >>> >>> >>> On 04/06/2017 04:52 PM, Arnaud Boré wrote: >>> > Dear Freesurfer's experts, >>> > I draw a specific region on fsaverage using QDEC, then I mapped >>> this >>> > label on each subject using mri_label2label. I looked at these >>> > registered labels using freeview. Most of them are perfect but for >>> > some of them I would like to correct the segmentation. I would >>> like to >>> > modify it using QDEC but when I overlay this label on the surface >>> of >>> > my subject it has been shifted. I think this shift is because >>> QDEC is >>> > using fsaverage as the standard space. I try opening QDEC using the >>> > "average" option and use the subject I want but I still get this >>> > shift. am I missing something ? >>> > Thank you in advance for your help. >>> > Arnaud Bore >>> > >>> > >>> > >>> > _______________________________________________ >>> > Freesurfer mailing list >>> > Freesurfer@nmr.mgh.harvard.edu >>> <mailto:Freesurfer@nmr.mgh.harvard.edu> >>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>> >>> -- >>> Douglas N. Greve, Ph.D. >>> MGH-NMR Center >>> gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>> Phone Number: 617-724-2358 <tel:617-724-2358> >>> Fax: 617-726-7422 <tel:617-726-7422> >>> >>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>> <https://gate.nmr.mgh.harvard.edu/filedrop2> >>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >>> Outgoing: >>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu <mailto:freesur...@nmr.mgh.har >>> vard.edu> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>> >>> >>> The information in this e-mail is intended only for the person to >>> whom it is >>> addressed. If you believe this e-mail was sent to you in error and >>> the e-mail >>> contains patient information, please contact the Partners >>> Compliance HelpLine at >>> http://www.partners.org/complianceline >>> <http://www.partners.org/complianceline> . If the e-mail was sent >>> to you in error >>> but does not contain patient information, please contact the >>> sender and properly >>> dispose of the e-mail. >>> >>> >>> >>> >>> -- Basile Pinsard >>> /PhD candidate, >>> / >>> Laboratoire d'Imagerie Biomédicale, UMR S 1146 / UMR 7371, >>> Sorbonne Universités, UPMC, INSERM, CNRS >>> /Brain-Cognition-Behaviour Doctoral School /*, *ED3C*, *UPMC, >>> Sorbonne Universités >>> Biomedical Sciences Doctoral School, Faculty of Medicine, >>> Université de Montréal >>> CRIUGM, Université de Montréal >>> >>> >>> >>> >>> -- >>> Arnaud BORE >>> Research assistant >>> Cellulaire : (001) 514-647-8649 >>> >>> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> >> > > > -- > Arnaud BORE > Research assistant > Cellulaire : (001) 514-647-8649 <(514)%20647-8649> > > -- Arnaud BORE Research assistant Cellulaire : (001) 514-647-8649
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