Thanks.The file could not be open by fslview.I presume that it is inflated.How
can I do to transform it?Stefano
----Messaggio originale----
Da: "Douglas Greve" <gr...@nmr.mgh.harvard.edu>
Data: 6-apr-2017 17.56
A: <freesurfer@nmr.mgh.harvard.edu>
Ogg: Re: [Freesurfer] R: R: Re: R: Re: Whole preprocessing with FAST without to
perform a seed based analysis
It will be in the space that you analyzed it in. If you want the
native space, then use -native when running preproc-sess and
mkanalysis
On 4/6/17 2:34 AM, std...@virgilio.it
wrote:
Furthermore, the res-001.nii which is produce in
produced in the res folder in not the same dimension of f.nii.
I would do the whole FAST preprocessing on f.nii.,
maintaining the same dimension and open it with FSL.
Thanks
Stefano
----Messaggio originale----
Da: std...@virgilio.it
Data: 5-apr-2017 23.39
A: "Freesurfer support
list"<freesurfer@nmr.mgh.harvard.edu>
Ogg: [Freesurfer] R: Re: R: Re: Whole preprocessing with FAST
without to perform a seed based analysis
Hi,
as you advise I have run selxavg3-sess with the -svres
option.
I found a folder called "res" which contain
"res-001.nii". Is it the f.nii fully processed?
Thanks
Stefano
----Messaggio originale----
Da: "Douglas Greve" <gr...@nmr.mgh.harvard.edu>
Data: 14-mar-2017 17.38
A: <freesurfer@nmr.mgh.harvard.edu>
Ogg: Re: [Freesurfer] R: Re: Whole preprocessing with FAST
without to perform a seed based analysis
You can't on either occasion just using preproc-sess.
You can create an analysis with those components, then
run selxavg3-sess with the -svres option. This will
create a folder called eres with volumes that have had
all the nuisance variables and low freqeuncies regressed
out
On 3/14/17 12:32 PM, std...@virgilio.it
wrote:
Thanks.
1- By using only preproc-sess, how can I perform
"band pass filtering"?
2- And how can I take in account the nuisance
variables: the CSF from which the top 5 principle
components, the white matter from which the top 5
principle components, motion correction parameters
(-mcextreg), 5th order polynomial. How can I eliminate
the first 4 time points?
Regards
Stefano
----Messaggio originale----
Da: "Douglas Greve" <gr...@nmr.mgh.harvard.edu>
Data: 14-mar-2017 16.14
A: <freesurfer@nmr.mgh.harvard.edu>
Ogg: Re: [Freesurfer] Whole preprocessing with FAST
without to perform a seed based analysis
just use preproc-sess
On 3/14/17 10:45 AM, std...@virgilio.it
wrote:
Hi list,
in FS-FAST, on rs-fMRI data, is possible to
run selxavg3-sess without -a option?
I would use whole the FS-FAST to preprocess
my data. I would include the mkanalysis-sess
step but I would not perform a seed-based
analysis.
Thanks
Stefano
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
