Not yet. Did you try to load it into freeview? If so, do you still see the shift?
On 04/07/2017 04:14 PM, Arnaud Boré wrote: > Do you want me to attach/upload a screenshot of the shift ? > > 2017-04-07 13:10 GMT-04:00 Arnaud Boré <arnaud.b...@gmail.com > <mailto:arnaud.b...@gmail.com>>: > > I try to view it on O_Nap_04MB. > > I've tried these two command lines: > qdec --table qdec.all_subjs.table.dat --surface > O_Nap_04MB/surf/rh.pial --label O_Nap_04MB/label/rh.M1_v4.label > qdec --table qdec.all_subjs.table.dat --average O_Nap_04MB > --surface O_Nap_04MB/surf/rh.pial --label > O_Nap_04MB/label/rh.M1_v4.label > > I get the same results. > > > 2017-04-07 12:03 GMT-04:00 Douglas N Greve > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>>: > > when you view it in qdec, are you viewing it on fsaverage or > on O_Nap_04MB ? > > > On 04/07/2017 11:47 AM, Arnaud Boré wrote: > > I used this command line: mri_label2label --srclabel > rh.M1_v4.label --srcsubject fsaverage --trgsubject > O_Nap_04MB --trglabel rh.M1_v4.label --regmethod surface > --hemi rh > The output label overlaps the surface using freeview but > using qdec it is shifted. > Thank you for your help. > Arnaud > > 2017-04-07 10:23 GMT-04:00 basile pinsard > <basile.pins...@gmail.com > <mailto:basile.pins...@gmail.com> > <mailto:basile.pins...@gmail.com > <mailto:basile.pins...@gmail.com>>>: > > > ---------- Forwarded message ---------- > From: *Douglas N Greve* <gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu> > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>>> > Date: Thu, Apr 6, 2017 at 4:53 PM > Subject: Re: [Freesurfer] QDEC and ROI drawing > To: freesurfer@nmr.mgh.harvard.edu > <mailto:freesurfer@nmr.mgh.harvard.edu> > <mailto:freesurfer@nmr.mgh.harvard.edu > <mailto:freesurfer@nmr.mgh.harvard.edu>> > > > what is your label2label command line? > > > > On 04/06/2017 04:52 PM, Arnaud Boré wrote: > > Dear Freesurfer's experts, > > I draw a specific region on fsaverage using QDEC, > then I mapped this > > label on each subject using mri_label2label. I > looked at these > > registered labels using freeview. Most of them are > perfect but for > > some of them I would like to correct the > segmentation. I would > like to > > modify it using QDEC but when I overlay this label > on the surface of > > my subject it has been shifted. I think this shift > is because > QDEC is > > using fsaverage as the standard space. I try opening > QDEC using the > > "average" option and use the subject I want but I > still get this > > shift. am I missing something ? > > Thank you in advance for your help. > > Arnaud Bore > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu> > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>> > Phone Number: 617-724-2358 <tel:617-724-2358> > <tel:617-724-2358 <tel:617-724-2358>> > Fax: 617-726-7422 <tel:617-726-7422> <tel:617-726-7422 > <tel:617-726-7422>> > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > <https://gate.nmr.mgh.harvard.edu/filedrop2> > <https://gate.nmr.mgh.harvard.edu/filedrop2 > <https://gate.nmr.mgh.harvard.edu/filedrop2>> > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>> > Outgoing: > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> > > <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>> > > > The information in this e-mail is intended only for > the person to > whom it is > addressed. If you believe this e-mail was sent to you > in error and > the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline > <http://www.partners.org/complianceline> > <http://www.partners.org/complianceline > <http://www.partners.org/complianceline>> . If the e-mail > was sent > to you in error > but does not contain patient information, please > contact the > sender and properly > dispose of the e-mail. > > > > > -- Basile Pinsard > /PhD candidate, > / > Laboratoire d'Imagerie Biomédicale, UMR S 1146 / UMR 7371, > Sorbonne Universités, UPMC, INSERM, CNRS > /Brain-Cognition-Behaviour Doctoral School /*, *ED3C*, > *UPMC, > Sorbonne Universités > Biomedical Sciences Doctoral School, Faculty of Medicine, > Université de Montréal > CRIUGM, Université de Montréal > > > > > -- > Arnaud BORE > Research assistant > Cellulaire : (001) 514-647-8649 <tel:514-647-8649> > > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > Phone Number: 617-724-2358 <tel:617-724-2358> > Fax: 617-726-7422 <tel:617-726-7422> > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > <https://gate.nmr.mgh.harvard.edu/filedrop2> > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > Outgoing: > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> > > > > > -- > Arnaud BORE > Research assistant > Cellulaire : (001) 514-647-8649 <tel:%28514%29%20647-8649> > > > > > -- > Arnaud BORE > Research assistant > Cellulaire : (001) 514-647-8649 > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
