Perhaps something to do with libcrypt-2.*.so ??
https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2014-September/040528.html - Joshua Lee, Ph.D. Post-Doctoral Researcher MIND Institute University of California, Davis 530.747.3805 On Thu, Jun 2, 2016 at 12:36 PM, Joshua Lee <jki...@ucdavis.edu> wrote: > I do note that I can enter "freeview ./brain.mgz" and the image opens. > Then I can manuall save it as a .nii > > - > Joshua Lee, Ph.D. > Post-Doctoral Researcher > MIND Institute > University of California, Davis > 530.747.3805 > > On Thu, Jun 2, 2016 at 12:33 PM, Joshua Lee <jki...@ucdavis.edu> wrote: > >> I had replaced the user name in the output I posted to the listserv for >> security reasons. I am not on a virtual machine. Fresh install on bare >> metal. >> ls -l ../ >> >> ... >>> drwxr-xr-x 13 myuser myuser 4096 Jun 2 11:50 mri >>> ... >>> >>> >> - >> Joshua Lee, Ph.D. >> Post-Doctoral Researcher >> MIND Institute >> University of California, Davis >> 530.747.3805 >> >> On Thu, Jun 2, 2016 at 12:25 PM, dgw <dgwake...@gmail.com> wrote: >> >>> Is this a virtual machine? (The username seems odd...) >>> >>> What is the output of whoami? >>> >>> What is the output of ls -l ../? >>> >>> hth >>> d >>> >>> >>> >>> On Thu, Jun 2, 2016 at 3:19 PM, Joshua Lee <jki...@ucdavis.edu> wrote: >>> > Hi Doug, >>> > >>> > Yes the quoted lines were output fromt her terminal. >>> > >>> >> ls -l brain.mgz >>> >> -rwxrwx--- 1 myuser myuser 1216430 May 18 17:06 brain.mgz >>> > >>> > >>> > I have many Tb of disk space. I can chmod 777 the files and still seg >>> > faults. >>> > >>> > Thanks >>> > Josh >>> > >>> > >>> > >>> > - >>> > Joshua Lee, Ph.D. >>> > Post-Doctoral Researcher >>> > MIND Institute >>> > University of California, Davis >>> > 530.747.3805 >>> > >>> > On Thu, Jun 2, 2016 at 12:13 PM, Douglas N Greve < >>> gr...@nmr.mgh.harvard.edu> >>> > wrote: >>> >> >>> >> Can you send the full terminal output? Or is that it? Do you have >>> enough >>> >> disc space or is it running out? what is the result of >>> >> ls -l brain.mgz >>> >> >>> >> >>> >> >>> >> On 06/02/2016 03:07 PM, Joshua Lee wrote: >>> >> > On freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 installed on >>> >> > Ubuntu 16.04 LTS >>> >> > mri_convert is seg faulting >>> >> > >>> >> > >>> >> > >>ls brain* >>> >> > brain.finalsurfs.mgz brainmask.auto.mgz brainmask.mgz >>> brain.mgz >>> >> > >>> >> > mri_convert ./brain.mgz --in_type mgz --out_type nii -o >>> ./brain.nii >>> >> > >>> >> > $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ >>> >> > reading from ./brain.mgz... >>> >> > Segmentation fault (core dumped) >>> >> > >>> >> > >>> >> > Any ideas? >>> >> > >>> >> > Thanks >>> >> > >>> >> > Joshua >>> >> > >>> >> > >>> >> > >>> >> > _______________________________________________ >>> >> > Freesurfer mailing list >>> >> > Freesurfer@nmr.mgh.harvard.edu >>> >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >> >>> >> -- >>> >> Douglas N. Greve, Ph.D. >>> >> MGH-NMR Center >>> >> gr...@nmr.mgh.harvard.edu >>> >> Phone Number: 617-724-2358 >>> >> Fax: 617-726-7422 >>> >> >>> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>> >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> >> Outgoing: >>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>> >> >>> >> _______________________________________________ >>> >> Freesurfer mailing list >>> >> Freesurfer@nmr.mgh.harvard.edu >>> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >> >>> >> >>> >> The information in this e-mail is intended only for the person to >>> whom it >>> >> is >>> >> addressed. If you believe this e-mail was sent to you in error and the >>> >> e-mail >>> >> contains patient information, please contact the Partners Compliance >>> >> HelpLine at >>> >> http://www.partners.org/complianceline . If the e-mail was sent to >>> you in >>> >> error >>> >> but does not contain patient information, please contact the sender >>> and >>> >> properly >>> >> dispose of the e-mail. >>> >> >>> > >>> > >>> > _______________________________________________ >>> > Freesurfer mailing list >>> > Freesurfer@nmr.mgh.harvard.edu >>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> > >>> > >>> > The information in this e-mail is intended only for the person to whom >>> it is >>> > addressed. If you believe this e-mail was sent to you in error and the >>> > e-mail >>> > contains patient information, please contact the Partners Compliance >>> > HelpLine at >>> > http://www.partners.org/complianceline . If the e-mail was sent to >>> you in >>> > error >>> > but does not contain patient information, please contact the sender and >>> > properly >>> > dispose of the e-mail. >>> > >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >> >> >
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