I had replaced the user name in the output I posted to the listserv for security reasons. I am not on a virtual machine. Fresh install on bare metal. ls -l ../
... > drwxr-xr-x 13 myuser myuser 4096 Jun 2 11:50 mri > ... > > - Joshua Lee, Ph.D. Post-Doctoral Researcher MIND Institute University of California, Davis 530.747.3805 On Thu, Jun 2, 2016 at 12:25 PM, dgw <dgwake...@gmail.com> wrote: > Is this a virtual machine? (The username seems odd...) > > What is the output of whoami? > > What is the output of ls -l ../? > > hth > d > > > > On Thu, Jun 2, 2016 at 3:19 PM, Joshua Lee <jki...@ucdavis.edu> wrote: > > Hi Doug, > > > > Yes the quoted lines were output fromt her terminal. > > > >> ls -l brain.mgz > >> -rwxrwx--- 1 myuser myuser 1216430 May 18 17:06 brain.mgz > > > > > > I have many Tb of disk space. I can chmod 777 the files and still seg > > faults. > > > > Thanks > > Josh > > > > > > > > - > > Joshua Lee, Ph.D. > > Post-Doctoral Researcher > > MIND Institute > > University of California, Davis > > 530.747.3805 > > > > On Thu, Jun 2, 2016 at 12:13 PM, Douglas N Greve < > gr...@nmr.mgh.harvard.edu> > > wrote: > >> > >> Can you send the full terminal output? Or is that it? Do you have enough > >> disc space or is it running out? what is the result of > >> ls -l brain.mgz > >> > >> > >> > >> On 06/02/2016 03:07 PM, Joshua Lee wrote: > >> > On freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 installed on > >> > Ubuntu 16.04 LTS > >> > mri_convert is seg faulting > >> > > >> > > >> > >>ls brain* > >> > brain.finalsurfs.mgz brainmask.auto.mgz brainmask.mgz brain.mgz > >> > > >> > mri_convert ./brain.mgz --in_type mgz --out_type nii -o > ./brain.nii > >> > > >> > $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ > >> > reading from ./brain.mgz... > >> > Segmentation fault (core dumped) > >> > > >> > > >> > Any ideas? > >> > > >> > Thanks > >> > > >> > Joshua > >> > > >> > > >> > > >> > _______________________________________________ > >> > Freesurfer mailing list > >> > Freesurfer@nmr.mgh.harvard.edu > >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> > >> -- > >> Douglas N. Greve, Ph.D. > >> MGH-NMR Center > >> gr...@nmr.mgh.harvard.edu > >> Phone Number: 617-724-2358 > >> Fax: 617-726-7422 > >> > >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html > >> Outgoing: > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > >> > >> _______________________________________________ > >> Freesurfer mailing list > >> Freesurfer@nmr.mgh.harvard.edu > >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> > >> > >> The information in this e-mail is intended only for the person to whom > it > >> is > >> addressed. If you believe this e-mail was sent to you in error and the > >> e-mail > >> contains patient information, please contact the Partners Compliance > >> HelpLine at > >> http://www.partners.org/complianceline . If the e-mail was sent to you > in > >> error > >> but does not contain patient information, please contact the sender and > >> properly > >> dispose of the e-mail. > >> > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to whom > it is > > addressed. If you believe this e-mail was sent to you in error and the > > e-mail > > contains patient information, please contact the Partners Compliance > > HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to you > in > > error > > but does not contain patient information, please contact the sender and > > properly > > dispose of the e-mail. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
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