Is this a virtual machine? (The username seems odd...) What is the output of whoami?
What is the output of ls -l ../? hth d On Thu, Jun 2, 2016 at 3:19 PM, Joshua Lee <jki...@ucdavis.edu> wrote: > Hi Doug, > > Yes the quoted lines were output fromt her terminal. > >> ls -l brain.mgz >> -rwxrwx--- 1 myuser myuser 1216430 May 18 17:06 brain.mgz > > > I have many Tb of disk space. I can chmod 777 the files and still seg > faults. > > Thanks > Josh > > > > - > Joshua Lee, Ph.D. > Post-Doctoral Researcher > MIND Institute > University of California, Davis > 530.747.3805 > > On Thu, Jun 2, 2016 at 12:13 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> > wrote: >> >> Can you send the full terminal output? Or is that it? Do you have enough >> disc space or is it running out? what is the result of >> ls -l brain.mgz >> >> >> >> On 06/02/2016 03:07 PM, Joshua Lee wrote: >> > On freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 installed on >> > Ubuntu 16.04 LTS >> > mri_convert is seg faulting >> > >> > >> > >>ls brain* >> > brain.finalsurfs.mgz brainmask.auto.mgz brainmask.mgz brain.mgz >> > >> > mri_convert ./brain.mgz --in_type mgz --out_type nii -o ./brain.nii >> > >> > $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ >> > reading from ./brain.mgz... >> > Segmentation fault (core dumped) >> > >> > >> > Any ideas? >> > >> > Thanks >> > >> > Joshua >> > >> > >> > >> > _______________________________________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
