Hi Bruce, just checking in to see if you have had an opportunity to take a look at the data I sent over?
Thanks Corinna On Wed, May 18, 2016 at 6:19 PM, Corinna Bauer <corinna...@gmail.com> wrote: > Sure. I'm uploading now. The above is approximately slice 75, although the > control points/wm surface problem is seen throughout in this subject. > > Thanks > > Corinna > > On Tue, May 17, 2016 at 3:46 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> > wrote: > >> Hi Corinna >> >> it's hard to tell what's going on from a single slice. If you upload the >> subject and tell us the specific coordinates that you see problems in we >> will take a look >> >> cheers >> Bruce >> On Tue, 17 May 2016, Corinna Bauer wrote: >> >> Hello all,We are analyzing data from our collaborators and are running >>> into >>> some difficulties with the accuracy of the pial and wm boundaries. The >>> wm.mgz appears to follow the actual WM, independent of the wm surface >>> boundary. Attached is an example showing two types of problems. >>> 1. the WM surface is inaccurate regardless of the number of control >>> points >>> used. >>> 2. The pial surface is inaccurate, missing a bunch of the sulcal and >>> gyral >>> patterns of the left parietal lobe (see area around cursor). >>> >>> For completeness, I have also included the wm.mgz at the same slice. >>> >>> I should mention that these problems has been occurring in multiple >>> subjects. >>> >>> Any suggestions?? >>> >>> Thanks >>> >>> Corinna >>> >>> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >
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