Hello, Have you been able to look at the data I sent over yet? It would be great to get a sense of what we can or cannot do to correct the boundaries.
Thanks Corinna On Wed, May 25, 2016 at 12:05 PM, Corinna Bauer <corinna...@gmail.com> wrote: > Hi Bruce, just checking in to see if you have had an opportunity to take a > look at the data I sent over? > > Thanks > > Corinna > > On Wed, May 18, 2016 at 6:19 PM, Corinna Bauer <corinna...@gmail.com> > wrote: > >> Sure. I'm uploading now. The above is approximately slice 75, although >> the control points/wm surface problem is seen throughout in this subject. >> >> Thanks >> >> Corinna >> >> On Tue, May 17, 2016 at 3:46 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu >> > wrote: >> >>> Hi Corinna >>> >>> it's hard to tell what's going on from a single slice. If you upload the >>> subject and tell us the specific coordinates that you see problems in we >>> will take a look >>> >>> cheers >>> Bruce >>> On Tue, 17 May 2016, Corinna Bauer wrote: >>> >>> Hello all,We are analyzing data from our collaborators and are running >>>> into >>>> some difficulties with the accuracy of the pial and wm boundaries. The >>>> wm.mgz appears to follow the actual WM, independent of the wm surface >>>> boundary. Attached is an example showing two types of problems. >>>> 1. the WM surface is inaccurate regardless of the number of control >>>> points >>>> used. >>>> 2. The pial surface is inaccurate, missing a bunch of the sulcal and >>>> gyral >>>> patterns of the left parietal lobe (see area around cursor). >>>> >>>> For completeness, I have also included the wm.mgz at the same slice. >>>> >>>> I should mention that these problems has been occurring in multiple >>>> subjects. >>>> >>>> Any suggestions?? >>>> >>>> Thanks >>>> >>>> Corinna >>>> >>>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> The information in this e-mail is intended only for the person to whom >>> it is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you >>> in error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >>> >>> >> >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
