Sure. I'm uploading now. The above is approximately slice 75, although the control points/wm surface problem is seen throughout in this subject.
Thanks Corinna On Tue, May 17, 2016 at 3:46 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Corinna > > it's hard to tell what's going on from a single slice. If you upload the > subject and tell us the specific coordinates that you see problems in we > will take a look > > cheers > Bruce > On Tue, 17 May 2016, Corinna Bauer wrote: > > Hello all,We are analyzing data from our collaborators and are running into >> some difficulties with the accuracy of the pial and wm boundaries. The >> wm.mgz appears to follow the actual WM, independent of the wm surface >> boundary. Attached is an example showing two types of problems. >> 1. the WM surface is inaccurate regardless of the number of control points >> used. >> 2. The pial surface is inaccurate, missing a bunch of the sulcal and gyral >> patterns of the left parietal lobe (see area around cursor). >> >> For completeness, I have also included the wm.mgz at the same slice. >> >> I should mention that these problems has been occurring in multiple >> subjects. >> >> Any suggestions?? >> >> Thanks >> >> Corinna >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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