Hi Susanne
we will need the full command lines you used and screen output in order to
help you
cheers
Bruce
On Wed, 23 Dec 2015, Schell, Susanne
wrote:
Dear colleagues,
We are recently using the freesurfer recon-all command
recon-all –s XXXX –I XXXX.nii.gz
recon-all –s XXXX –all
where XXXX stands for the subject ID. I have been trying to execute this
command with the different input files:
1) original dicom-files
2) nii-file where the field of view was cut, apart from that the same
file as in 3)
3) nii.gz-file, was computed by mri_convert with the files from 1)
We guessed results should be the same, but unfortunately, the segmentation
looks slightly different in all three cases.
Maybe you can help us by trying to find out why the output files are
different?
Thanks very much in advance!
Best regards,
Susanne
______________________________________
Susanne Schell, Dipl.-Psych.
Sektion Störungen der Persönlichkeitsentwicklung
Klinik für Kinder- und Jugendpsychiatrie
Universitätsklinikum Heidelberg
Tel: (+49) – (0)6221-56 35135
e-mail: susanne.sch...@med.uni-heidelberg.de
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