did you run recon-all? If so, check the recon-all.log for errors
On Wed, 26 Aug 2015, Cat Chong wrote:
no, seems to be plenty left.. 240 TB On Wednesday, August 26, 2015 12:23 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: they are empty (zero size). Maybe your disk filled up? On Wed, 26 Aug 2015, Cat Chong wrote: > Hi Bruce, > > Yes, they exist. > but this seems strange... > -rwx------+ 1 mxx MF\Domain Users 0 Aug 26 09:12 T1.mgz > -rwx------+ 1 mxx MF\Domain Users 0 Aug 26 09:12 wm.mgz > -rwx------+ 1 mxx MF\Domain Users 0 Aug 26 09:12 brainmask.mgz > > > > On Wednesday, August 26, 2015 12:04 PM, Bruce Fischl > <fis...@nmr.mgh.harvard.edu> wrote: > > > Hi Cat > > do those file exist? What does ls -l tell you for them? > Bruce > > On Wed, 26 Aug 2015, Cat Chong wrote: > > > Dear Experts, > > > > I am trying to use Freeview to view volumes using the command listed on > the > > website: http://freesurfer.net/fswiki/FsTutorial/OutputData_freeview but > the > > only volume that loads is the aseg. I am not able to load the T1, wm, or > > brainmask mgz’s . either from the terminal or through the FreeView gui. > > > > I am using Freesurfer 5.3 and have downloaded XQuarz on a Mac OSX Lion > > 10.7.5 workstation. > > Below is the command I am using and the terminal output. I would very much > > appreciate any help or insight. > > cheers, > > cat > > > > Below is my command: > > > > freeview -v \ > > C1023_out/mri/T1.mgz \ > > C1023_out/mri/wm.mgz \ > > C1023_out/mri/brainmask.mgz \ > > C1023_out/mri/aseg.mgz:colormap=lut:opacity=0.2 \ > > -f C1023_out/surf/lh.white:edgecolor=blue \ > > C1023_out/surf/lh.pial:edgecolor=red \ > > C1023_out/surf/rh.white:edgecolor=blue \ > > C1023_out/surf/rh.pial:edgecolor=red > > > > > > Terminal error: > > > > Freeview[4393:703] invalid drawable > > Freeview[4393:703] invalid drawable > > Freeview[4393:703] invalid drawable > > Freeview[4393:703] invalid drawable > > Freeview[4393:703] invalid drawable > > Freeview[4393:703] invalid drawable > > Freeview[4393:703] invalid drawable > > Freeview[4393:703] invalid drawable > > mghRead(/Volumes/home/Documents/xx/C1023_out/mri/T1.mgz, -1): read error > > mghRead(/Volumes/home/Documents/xx /C1023_out/mri/T1.mgz, -1): read error > > MRIread failed: Unable to read from /Volumes/home/Documents/xx > > /C1023_out/mri/T1.mgz > > mghRead(/Volumes/home/Documents/xx /C1023_out/mri/wm.mgz, -1): read error > > MRIread failed: Unable to read from /Volumes/home/Documents/xx > > /C1023_out/mri/wm.mgz > > mghRead(/Volumes/home/Documents/xx /C1023_out/mri/wm.mgz, -1): read error > > mghRead(/Volumes/home/Documents/xx/C1023_out/mri/brainmask.mgz, -1): read > > error > > > > > > MRIread failed: Unable to read from > > /Volumes/home/Documents/xx/C1023_out/mri/brainmask.mgz > > mghRead(/Volumes/home/Documents/xx/C1023_out/mri/brainmask.mgz, -1): read > > error > > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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