Hi Bruce,
Yes, they exist.but this seems strange...-rwx------+ 1 mxx MF\Domain Users
0 Aug 26 09:12 T1.mgz
-rwx------+ 1 mxx MF\Domain Users 0 Aug 26 09:12 wm.mgz
-rwx------+ 1 mxx MF\Domain Users 0 Aug 26 09:12 brainmask.mgz
On Wednesday, August 26, 2015 12:04 PM, Bruce Fischl
<fis...@nmr.mgh.harvard.edu> wrote:
Hi Cat
do those file exist? What does ls -l tell you for them?
Bruce
On Wed, 26 Aug 2015, Cat Chong wrote:
> Dear Experts,
>
> I am trying to use Freeview to view volumes using the command listed on the
> website: http://freesurfer.net/fswiki/FsTutorial/OutputData_freeview but the
> only volume that loads is the aseg. I am not able to load the T1, wm, or
> brainmask mgz’s . either from the terminal or through the FreeView gui.
>
> I am using Freesurfer 5.3 and have downloaded XQuarz on a Mac OSX Lion
> 10.7.5 workstation.
> Below is the command I am using and the terminal output. I would very much
> appreciate any help or insight.
> cheers,
> cat
>
> Below is my command:
>
> freeview -v \
> C1023_out/mri/T1.mgz \
> C1023_out/mri/wm.mgz \
> C1023_out/mri/brainmask.mgz \
> C1023_out/mri/aseg.mgz:colormap=lut:opacity=0.2 \
> -f C1023_out/surf/lh.white:edgecolor=blue \
> C1023_out/surf/lh.pial:edgecolor=red \
> C1023_out/surf/rh.white:edgecolor=blue \
> C1023_out/surf/rh.pial:edgecolor=red
>
>
> Terminal error:
>
> Freeview[4393:703] invalid drawable
> Freeview[4393:703] invalid drawable
> Freeview[4393:703] invalid drawable
> Freeview[4393:703] invalid drawable
> Freeview[4393:703] invalid drawable
> Freeview[4393:703] invalid drawable
> Freeview[4393:703] invalid drawable
> Freeview[4393:703] invalid drawable
> mghRead(/Volumes/home/Documents/xx/C1023_out/mri/T1.mgz, -1): read error
> mghRead(/Volumes/home/Documents/xx /C1023_out/mri/T1.mgz, -1): read error
> MRIread failed: Unable to read from /Volumes/home/Documents/xx
> /C1023_out/mri/T1.mgz
> mghRead(/Volumes/home/Documents/xx /C1023_out/mri/wm.mgz, -1): read error
> MRIread failed: Unable to read from /Volumes/home/Documents/xx
> /C1023_out/mri/wm.mgz
> mghRead(/Volumes/home/Documents/xx /C1023_out/mri/wm.mgz, -1): read error
> mghRead(/Volumes/home/Documents/xx/C1023_out/mri/brainmask.mgz, -1): read
> error
>
>
> MRIread failed: Unable to read from
> /Volumes/home/Documents/xx/C1023_out/mri/brainmask.mgz
> mghRead(/Volumes/home/Documents/xx/C1023_out/mri/brainmask.mgz, -1): read
> error
>
>
>
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