Hi Andre
sorry, I don't remember how many regions there are. Should be easy enough
to count in matlab.
For the tractography question you'll have to wait for Anastasia to
respond
Bruce
On Thu, 26 Feb 2015, André Schmidt wrote:
Hi Bruce,
Thanks, yes I see these files in the mri folder. I like to use the
apart.a2009s+aseg.mgz file (how many regions are included in this file?) now
for tractography (every region as a seed mask) using probtrackx (sorry). How
can I create a text file with all these seed regions (including their path)?
Thanks again
Andre
________________________________________
Von: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu]" im Auftrag von "Bruce
Fischl [fis...@nmr.mgh.harvard.edu]
Gesendet: Donnerstag, 26. Februar 2015 15:13
An: Freesurfer support list
Betreff: Re: [Freesurfer] recon-all and subcortical regions
Hi Andre
if you ran recon-all you will have created a volume file names aseg.mgz
that has the subcortical segmentation (and an aparc+aseg.mgz that has
both subcortical and cortical in it)
cheers
Bruce
On Thu, 26 Feb 2015, André Schmidt
wrote:
Dear experts,
I use recon-all for the parcellation of my MPRAGE. As far as I can see this
procedure does not address subcortical regions - right? How can I
additionally perform a parcellation of subcortical regions?
Many thanks for your help
Andre
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