Hi Bruce, Thanks, yes I see these files in the mri folder. I like to use the apart.a2009s+aseg.mgz file (how many regions are included in this file?) now for tractography (every region as a seed mask) using probtrackx (sorry). How can I create a text file with all these seed regions (including their path)?
Thanks again Andre ________________________________________ Von: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu]" im Auftrag von "Bruce Fischl [fis...@nmr.mgh.harvard.edu] Gesendet: Donnerstag, 26. Februar 2015 15:13 An: Freesurfer support list Betreff: Re: [Freesurfer] recon-all and subcortical regions Hi Andre if you ran recon-all you will have created a volume file names aseg.mgz that has the subcortical segmentation (and an aparc+aseg.mgz that has both subcortical and cortical in it) cheers Bruce On Thu, 26 Feb 2015, André Schmidt wrote: > Dear experts, > I use recon-all for the parcellation of my MPRAGE. As far as I can see this > procedure does not address subcortical regions - right? How can I > additionally perform a parcellation of subcortical regions? > > Many thanks for your help > Andre > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
