Hi Doug, This file that your saying, will be created after glmfit-sim is done using the cache function and a threshold of 1.3 and absolute ,with y being the fsgd file? Am I understanding this correctly?
Thank you Joshua On Sat, Jun 1, 2013 at 12:14 AM, Douglas N Greve <gr...@nmr.mgh.harvard.edu>wrote: > There should be a file called something like cache.th13.abs.y.ocn.dat. > This will have a column for each cluster and a row for each subject. The > value in the row will be the input for each subject. > doug > > On 05/30/2013 11:21 PM, Joshua deSouza wrote: > > Hello everyone, > > > > Please pardon my rather simple question > > > > I have done a GLM fit anlysis and have obtained a file sig.mgh alonf > > with a few others after the analysis.As I know, I do not have to > > create ROIs in order to do this. I also understand that doing a > > multiple comparison analysis just compares the regions of importance > > and evaluates them giving the most resilient cluster depending on the > > threshold. So, this does not give a thickness estimate. I would like > > to know how do I get the cortical thickness values from the results? > > If so, can I do it after glmfit? > > > > And thanks Doug for your help in the other questions that I had prior > > to this! > > > > Thank you > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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