Hello Martin,
everything works fine with the newer versions of files.
Thanks for the help!
Have a wonderful day !
Alex.
Le 04/10/2012 8:04 PM, Martin Reuter a écrit :
You need a newer version of glmfit. This is not the 5.1 I think.
Best Martin
Alex Hanganu <al.hang...@yahoo.ca> wrote:
Hello Martin,
thanks for the help, I changed all the scripts from that page, but
the problem still persisted, so one of our colleagues found that
the mri_glmfit from the ReleaseNotes (15.8MB) is for Linux, and we
are using mac, so we changed back the mri_glmfit to the old
version (6MB), and now we have another error:
-----------------------------
SUBJECT pls_pd_base00 Running Within-Subject GLM
Writing ./tmp-pls_pd_base00_lh_thickness_CMeqOW/X-long.mat ...
mri_glmfit --y ./pls_pd_base00/surf/lh.long.thickness-stack.mgh
--X ./tmp-pls_pd_base00_lh_thickness_CMeqOW/X-long.mat
--allow-zero-dof --no-contrasts-ok --surf pls_pd_base00 lh
--label ./pls_pd_base00/label/lh.long.cortex.label --glmdir
./tmp-pls_pd_base00_lh_thickness_CMeqOW/glm
ERROR: Option --allow-zero-dof unknown
ERROR 255 : mri_glmfit did not work?
-----------------------------
Any ideas ?
Thanks for the help,
Best regards,
Alex.
------------------------------------------------------------------------
*De :* Martin Reuter <mreu...@nmr.mgh.harvard.edu>
*À :* Alexandru Hanganu <al.hang...@yahoo.ca>; FS Mailing List
<Freesurfer@nmr.mgh.harvard.edu>
*Envoyé le :* mercredi 3 octobre 2012 17h30
*Objet :* Re: [Freesurfer] long_mris_slopes error
Not sure.
Maybe try the updated scripts
From
http://martinos.org/~mreuter/long
<http://martinos.org/%7Emreuter/long>/
Best Martin
Alex Hanganu <al.hang...@yahoo.ca> wrote:
Dear Freesurfer Experts,
While performing the long_mris_slopes cmd, we receive an error:
------------------------------------------------------------------------
SUBJECT pls_pd_base00 Running Within-Subject GLM
Writing ./tmp-pls_pd_base00_lh_thickness_Rx7HLs/X-long.mat ...
mri_glmfit --y
/Applications/freesurfer/subjects/pls_pd_base00/surf/lh.long.thickness-stack.mgh
--X ./tmp-pls_pd_base00_lh_thickness_Rx7HLs/X-long.mat --allow-zero-dof
--no-contrasts-ok --surf pls_pd_base00 lh --label
/Applications/freesurfer/subjects/pls_pd_base00/label/lh.long.cortex.label
--glmdir ./tmp-pls_pd_base00_lh_thickness_Rx7HLs/glm
Traceback (most recent call last):
File "/Applications/freesurfer/bin/long_mris_slopes", line 732, in
<module>
run_cmd(cmd,'mri_glmfit did not
work?')
File
"/Applications/freesurfer/bin/long_mris_slopes", line 422, in
run_cmd
retcode = subprocess.call(args)
File
"/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/subprocess.py
<http://subprocess.py/>",
line 443, in call
return Popen(*popenargs, **kwargs).wait()
File
"/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/subprocess.py
<http://subprocess.py/>",
line 593, in __init__
errread, errwrite)
File
"/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/subprocess.py
<http://subprocess.py/>",
line 1079, in _execute_child
raise child_exception
OSError: [Errno 8] Exec format error
------------------------------------------------------------------------
we changed the mris_calc and mri_glmfit files with the new ones (8.2MB /
15.8MB).
Can you please help
with this
?
Thank you in advance,
Sincerely,
Alex.
------------------------------------------------------------------------
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