Hello Martin,
thanks for the help, I changed all the scripts from that page, but the problem
still persisted, so one of our colleagues found that the mri_glmfit from the
ReleaseNotes (15.8MB) is for Linux, and we are using mac, so we changed back
the mri_glmfit to the old version (6MB), and now we have another error:
-----------------------------
SUBJECT pls_pd_base00 Running Within-Subject GLM
Writing ./tmp-pls_pd_base00_lh_thickness_CMeqOW/X-long.mat ...
mri_glmfit --y ./pls_pd_base00/surf/lh.long.thickness-stack.mgh --X
./tmp-pls_pd_base00_lh_thickness_CMeqOW/X-long.mat --allow-zero-dof
--no-contrasts-ok --surf pls_pd_base00 lh --label
./pls_pd_base00/label/lh.long.cortex.label --glmdir
./tmp-pls_pd_base00_lh_thickness_CMeqOW/glm
ERROR: Option --allow-zero-dof unknown
ERROR 255 : mri_glmfit did not work?
-----------------------------
Any ideas ?
Thanks for the help,
Best regards,
Alex.
________________________________
De : Martin Reuter <mreu...@nmr.mgh.harvard.edu>
À : Alexandru Hanganu <al.hang...@yahoo.ca>; FS Mailing List
<Freesurfer@nmr.mgh.harvard.edu>
Envoyé le : mercredi 3 octobre 2012 17h30
Objet : Re: [Freesurfer] long_mris_slopes error
Not sure.
Maybe try the updated scripts
From
http://martinos.org/~mreuter/long/
Best Martin
Alex Hanganu <al.hang...@yahoo.ca> wrote:
Dear Freesurfer Experts,
>
>While performing the long_mris_slopes cmd, we receive an error:
>
>>________________________________
>
>SUBJECT pls_pd_base00 Running Within-Subject GLM
>
>Writing ./tmp-pls_pd_base00_lh_thickness_Rx7HLs/X-long.mat ...
>
>mri_glmfit --y
>/Applications/freesurfer/subjects/pls_pd_base00/surf/lh.long.thickness-stack.mgh
>
>--X ./tmp-pls_pd_base00_lh_thickness_Rx7HLs/X-long.mat --allow-zero-dof
>--no-contrasts-ok --surf pls_pd_base00 lh --label
>/Applications/freesurfer/subjects/pls_pd_base00/label/lh.long.cortex.label
>--glmdir ./tmp-pls_pd_base00_lh_thickness_Rx7HLs/glm
>
>Traceback (most recent call last):
>File "/Applications/freesurfer/bin/long_mris_slopes", line 732, in
><module>
>run_cmd(cmd,'mri_glmfit did not work?')
>File
"/Applications/freesurfer/bin/long_mris_slopes", line 422, in
>run_cmd
>retcode = subprocess.call(args)
>File
>"/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/subprocess.py",
>
>line 443, in call
>return Popen(*popenargs, **kwargs).wait()
>File
>"/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/subprocess.py",
>
>line 593, in __init__
>errread, errwrite)
>File
>"/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/subprocess.py",
>
>line 1079, in _execute_child
>raise child_exception
>OSError: [Errno 8] Exec format error
>>________________________________
>
>
>we changed the mris_calc and mri_glmfit files with the new ones (8.2MB /
>15.8MB).
>
>Can you please help with this ?
>
>Thank you in advance,
>
>Sincerely,
>Alex.
>
>>________________________________
>
>Freesurfer mailing list
>Freesurfer@nmr.mgh.harvard.edu
>https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>
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