You need a newer version of glmfit. This is not the 5.1 I think.
Best Martin
Alex Hanganu <al.hang...@yahoo.ca> wrote:
>Hello Martin,
>
>thanks for the help, I changed all the scripts from that page, but the
>problem still persisted, so one of our colleagues found that the
>mri_glmfit from the ReleaseNotes (15.8MB) is for Linux, and we are
>using mac, so we changed back the mri_glmfit to the old version (6MB),
>and now we have another error:
>
>-----------------------------
>SUBJECT pls_pd_base00 Running Within-Subject GLM
>
>Writing ./tmp-pls_pd_base00_lh_thickness_CMeqOW/X-long.mat ...
>
>mri_glmfit --y ./pls_pd_base00/surf/lh.long.thickness-stack.mgh --X
>./tmp-pls_pd_base00_lh_thickness_CMeqOW/X-long.mat --allow-zero-dof
> --no-contrasts-ok --surf pls_pd_base00 lh --label
>./pls_pd_base00/label/lh.long.cortex.label --glmdir
>./tmp-pls_pd_base00_lh_thickness_CMeqOW/glm
>
>ERROR: Option --allow-zero-dof unknown
>ERROR 255 : mri_glmfit did not work?
>-----------------------------
>
>
>Any ideas ?
>
>Thanks for the help,
>
>Best regards,
>Alex.
>
>
>
>________________________________
> De : Martin Reuter <mreu...@nmr.mgh.harvard.edu>
>À : Alexandru Hanganu <al.hang...@yahoo.ca>; FS Mailing List
><Freesurfer@nmr.mgh.harvard.edu>
>Envoyé le : mercredi 3 octobre 2012 17h30
>Objet : Re: [Freesurfer] long_mris_slopes error
>
>
>Not sure.
>Maybe try the updated scripts
>From
>http://martinos.org/~mreuter/long/
>
>Best Martin
>
>
>Alex Hanganu <al.hang...@yahoo.ca> wrote:
>Dear Freesurfer Experts,
>>
>>While performing the long_mris_slopes cmd, we receive an error:
>>
>>>________________________________
>>
>>SUBJECT pls_pd_base00 Running Within-Subject GLM
>>
>>Writing ./tmp-pls_pd_base00_lh_thickness_Rx7HLs/X-long.mat ...
>>
>>mri_glmfit --y
>>/Applications/freesurfer/subjects/pls_pd_base00/surf/lh.long.thickness-stack.mgh
>
>>--X ./tmp-pls_pd_base00_lh_thickness_Rx7HLs/X-long.mat
>--allow-zero-dof
>>--no-contrasts-ok --surf pls_pd_base00 lh --label
>>/Applications/freesurfer/subjects/pls_pd_base00/label/lh.long.cortex.label
>
>>--glmdir ./tmp-pls_pd_base00_lh_thickness_Rx7HLs/glm
>>
>>Traceback (most recent call last):
>>File "/Applications/freesurfer/bin/long_mris_slopes", line 732, in
>><module>
>>run_cmd(cmd,'mri_glmfit did not work?')
>>File
> "/Applications/freesurfer/bin/long_mris_slopes", line 422, in
>>run_cmd
>>retcode = subprocess.call(args)
>>File
>>"/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/subprocess.py",
>
>>line 443, in call
>>return Popen(*popenargs, **kwargs).wait()
>>File
>>"/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/subprocess.py",
>
>>line 593, in __init__
>>errread, errwrite)
>>File
>>"/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/subprocess.py",
>
>>line 1079, in _execute_child
>>raise child_exception
>>OSError: [Errno 8] Exec format error
>>>________________________________
>>
>>
>>we changed the mris_calc and mri_glmfit files with the new ones (8.2MB
>/
>>15.8MB).
>>
>>Can you please help with this ?
>>
>>Thank you in advance,
>>
>>Sincerely,
>>Alex.
>>
>>>________________________________
>>
>>Freesurfer mailing list
>>Freesurfer@nmr.mgh.harvard.edu
>>https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>>
>>
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