Dear Doug, I am having a partial field of view and a full brain scan. How can I integrate the results in the preproc-sess sequence in order to complete the preprocessing correctly?
Cheers pfannmoe On Mon, 04 Jun 2012 11:42:32 -0400 Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > You can try running register-sess outside of preproc-sess, something like > register-sess -s session -fsd bold -per-run -init-spm > > before you do that, you need to have spm5 and matlab, and change your > matlab/startup.m to add the spm5 path > path(path,'/usr/pubsw/common/spm/spm5'); > > doug > > ps. Is this whole brain coverage or are you chopping off some of the brain > > > On 06/04/2012 11:36 AM, Jörg Pfannmöller wrote: > > Dear Doug, > > > > indeed the initialization fails. I was able to initiate bbregister > > manually, giving a good registration result. Can you give me a hint how to > > modify the registration and keeping the preproc-sess stream intact? > > > > Cheers > > > > pfannmoe > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > -- Jörg Pfannmöller <pfannmo...@uni-greifswald.de> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
