Dear freesurfers,
I have a simple question concerning the freesurfer 5.1 FSFAST preprocessing. In
the preprocessing the functional images are registered to the anatomical ones
using bbregister. This is the 3rd in a series of 8 preprocessing steps. If the
preproc-sess registration fails it is possible to achieve a proper registration
using various options of bbregister. Does it suffice to replace the register
files created during the preprocessing with the ones received during the
registration correction in order to attain proper preprocessed data or are
there routines in steps 4 to 8 in the preprocessing which rely on the
registration?
Thanks in advance
pfannmoe
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