They rely on the registration. What is failing? It is usually the initialization that fails. If you're using FSL, you can try using the SPM registration (though it's a little trickier to set up). doug
On 06/04/2012 05:20 AM, Jörg Pfannmöller wrote: > Dear freesurfers, > > I have a simple question concerning the freesurfer 5.1 FSFAST preprocessing. > In the preprocessing the functional images are registered to the anatomical > ones using bbregister. This is the 3rd in a series of 8 preprocessing steps. > If the preproc-sess registration fails it is possible to achieve a proper > registration using various options of bbregister. Does it suffice to replace > the register files created during the preprocessing with the ones received > during the registration correction in order to attain proper preprocessed > data or are there routines in steps 4 to 8 in the preprocessing which rely on > the registration? > > Thanks in advance > > pfannmoe > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
