Hi Ines, this is a good thing to post to the list since there are others that might know better than me. Also, please include the full terminal output. thanks doug
On 05/18/2012 11:51 AM, Inês Violante wrote: > Thanks a lot! > > Just another question: > I get this message for one of my subjects using the previous command: > > ERROR: Too many out-of-range vertex indices in MRISreadAnnotationIntoArray! > > I must have done something wrong. Is there a way to correct this > without having to run the whole recon-all again? > > All the best, > > ines > > > On Fri, May 18, 2012 at 4:46 PM, Douglas N Greve > <gr...@nmr.mgh.harvard.edu> wrote: >> yes, but you might want to change the name of the stats file so that you >> don't overwrite the one that is there >> doug >> >> >> On 05/18/2012 11:39 AM, Inęs Violante wrote: >>> Thank you. >>> >>> I've tried this command: >>> >>> mris_anatomical_stats -f AC/stats/lh.aparc.stats -b -a >>> AC/label/lh.aparc.annot -c ./aparc.annot.ctab AC lh pial >>> >>> Would this be appropriate? >>> >>> >>> ines >>> >>> On Fri, May 18, 2012 at 4:32 PM, Douglas N Greve >>> <gr...@nmr.mgh.harvard.edu> wrote: >>>> And you can get the full command line from the >>>> $subject/scripts/recon-all.log file >>>> doug >>>> >>>> On 05/18/2012 10:41 AM, Michael Harms wrote: >>>>> The last argument of mris_anatomical_stats allows you to specify the >>>>> surface to use (pial in your case) >>>>> >>>>> cheers, >>>>> -MH >>>>> >>>>> >>>>> NAME >>>>> mris_anatomical_stats >>>>> >>>>> SYNOPSIS >>>>> mris_anatomical_stats [options]<subjectname> <hemi> >>>>> [<surfacename>] >>>>> >>>>> >>>>> On Fri, 2012-05-18 at 15:18 +0100, Inęs Violante wrote: >>>>>> Hi, >>>>>> >>>>>> I need to know the surface area of the structures in the aparc file >>>>>> but I want to obtain this measurement from the pial surface and not >>>>>> the white matter surface. >>>>>> How can I do that? >>>>>> >>>>>> Thank you a lot for your help. >>>>>> >>>>>> ines >>>>>> _______________________________________________ >>>>>> Freesurfer mailing list >>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>> >>>>>> >>>>>> The information in this e-mail is intended only for the person to whom >>>>>> it is >>>>>> addressed. If you believe this e-mail was sent to you in error and the >>>>>> e-mail >>>>>> contains patient information, please contact the Partners Compliance >>>>>> HelpLine at >>>>>> http://www.partners.org/complianceline . If the e-mail was sent to you >>>>>> in error >>>>>> but does not contain patient information, please contact the sender and >>>>>> properly >>>>>> dispose of the e-mail. >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> >>>>> >>>> -- >>>> Douglas N. Greve, Ph.D. >>>> MGH-NMR Center >>>> gr...@nmr.mgh.harvard.edu >>>> Phone Number: 617-724-2358 >>>> Fax: 617-726-7422 >>>> >>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
