You should be able to get the correct syntax by checking the recon- all.log file for an example.
cheers, -MH On Fri, 2012-05-18 at 15:48 +0100, Inês Violante wrote: > Hi, > > Thanks Michael. > However, when I try to do this using the aparc.annot file: > > mris_anatomical_stats -l CS/label/lh.aparc.annot -b CS lh pial > > I receive this error: > > mris_anatomical_stats: could not scan # of lines from CS/label/lh.aparc.annot > > I imagine this happens because the mris_anatomical_stats is waiting > for a .label file > > What I aim is the output of the aparcstats2table for the surface area > using the pial surface. > > Perhaps I am not using the correct command.... > > Thanks for the help. > > ines > > > On Fri, May 18, 2012 at 3:41 PM, Michael Harms <mha...@conte.wustl.edu> wrote: > > > > The last argument of mris_anatomical_stats allows you to specify the > > surface to use (pial in your case) > > > > cheers, > > -MH > > > > > > NAME > > mris_anatomical_stats > > > > SYNOPSIS > > mris_anatomical_stats [options] <subjectname> <hemi> > > [<surfacename>] > > > > > > On Fri, 2012-05-18 at 15:18 +0100, Inês Violante wrote: > >> Hi, > >> > >> I need to know the surface area of the structures in the aparc file > >> but I want to obtain this measurement from the pial surface and not > >> the white matter surface. > >> How can I do that? > >> > >> Thank you a lot for your help. > >> > >> ines > >> _______________________________________________ > >> Freesurfer mailing list > >> Freesurfer@nmr.mgh.harvard.edu > >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> > >> > >> The information in this e-mail is intended only for the person to whom it > >> is > >> addressed. If you believe this e-mail was sent to you in error and the > >> e-mail > >> contains patient information, please contact the Partners Compliance > >> HelpLine at > >> http://www.partners.org/complianceline . If the e-mail was sent to you in > >> error > >> but does not contain patient information, please contact the sender and > >> properly > >> dispose of the e-mail. > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
