Hi, Thanks Michael. However, when I try to do this using the aparc.annot file:
mris_anatomical_stats -l CS/label/lh.aparc.annot -b CS lh pial I receive this error: mris_anatomical_stats: could not scan # of lines from CS/label/lh.aparc.annot I imagine this happens because the mris_anatomical_stats is waiting for a .label file What I aim is the output of the aparcstats2table for the surface area using the pial surface. Perhaps I am not using the correct command.... Thanks for the help. ines On Fri, May 18, 2012 at 3:41 PM, Michael Harms <mha...@conte.wustl.edu> wrote: > > The last argument of mris_anatomical_stats allows you to specify the > surface to use (pial in your case) > > cheers, > -MH > > > NAME > mris_anatomical_stats > > SYNOPSIS > mris_anatomical_stats [options] <subjectname> <hemi> > [<surfacename>] > > > On Fri, 2012-05-18 at 15:18 +0100, Inês Violante wrote: >> Hi, >> >> I need to know the surface area of the structures in the aparc file >> but I want to obtain this measurement from the pial surface and not >> the white matter surface. >> How can I do that? >> >> Thank you a lot for your help. >> >> ines >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
