If you want to register your DWI to T1, you should register to mri/brain.mgz. You can do this with bbregister, or with any affine registration tool of your choice.
On Mon, 26 Mar 2012, Johnson wrote: > Hi > I found it in a 256x256x256 space while the T1 we use is in different space, > I found this page on the registration step: > http://surfer.nmr.mgh.harvard.edu/fswiki/FsAnat-to-NativeAnat > I wish to know how this script work? > > mri_label2vol --seg aseg.mgz --temp rawavg.mgz --o aseg-in-rawavg.mgz > --regheader aseg.mgz > > what is the transformation used ? > JG > > > On 03/26/2012 12:24 PM, Anastasia Yendiki wrote: >> >> Hi Johnson - The aparc+aseg.mgz is in the same space as the T1 used as >> input to freesurfer. >> >> a.y >> >> On Mon, 26 Mar 2012, Johnson wrote: >> >> > Hi FS expert >> > I need to know the transformation matrix itself since I will do the >> > transformation in matlab. >> > I successfully transformed white matter fibers coordinates to T1 using >> > AIR 5.0 from LONI lab. >> > They provide a transformation matrix. >> > Now I want to transform the coordinates from T1 to Freesurfer space, so >> > my question is: what is the transformation matrix that relates the T1 >> > which FS have used for parcellation and segmentation with the >> > aparc+aseg.mgz file? >> > I searched the logs but couldn't find such matrix. >> > I don't want to do a registration step since it will be less accurate >> > than the one that was generated during the segmentation process. >> > Also is it just one transformation or a combination of transformations? >> > >> > thanks >> > >> > >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
