Hi Ivan

you can convert any volume to any supported output type using mri_convert. It will figure out the format from the extension, so:

mri_convert aseg.mgz aseg.nii.gz

or

mri_convert aseg.mgz aseg.nii

should do the trick

cheers
Bruce



On Mon, 30 Jan 2012, Fellhauer, Iven wrote:


Dear all,

 

I run recon-all with the  ?autorecon1 and ?autorecon2 options. Now I want to
store the segmentation results in a spm like way. One nifti file for each
matter. Can I do this with freesurfer? And how can I do this with
freesurfer?

 

Best regards,

 

Iven Fellhauer

 

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Email: iven.fellha...@med.uni-heidelberg.de

 


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