Hi Bruce And thank you for your hint, but where are the files for GM, WM and CFS stored in the Freesurfer output directory structur?
Best regards, Iven -----Ursprüngliche Nachricht----- Von: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] Gesendet: Montag, 30. Januar 2012 15:20 An: Fellhauer, Iven Cc: freesurfer@nmr.mgh.harvard.edu Betreff: Re: [Freesurfer] Save segmentation results as nifi files Hi Ivan you can convert any volume to any supported output type using mri_convert. It will figure out the format from the extension, so: mri_convert aseg.mgz aseg.nii.gz or mri_convert aseg.mgz aseg.nii should do the trick cheers Bruce On Mon, 30 Jan 2012, Fellhauer, Iven wrote: > > Dear all, > > > > I run recon-all with the ?autorecon1 and ?autorecon2 options. Now I > want to store the segmentation results in a spm like way. One nifti > file for each matter. Can I do this with freesurfer? And how can I do > this with freesurfer? > > > > Best regards, > > > > Iven Fellhauer > > > > ---------------------------------------------------------------- > > Universitätsklinikum Heidelberg > > Zentrum für Psychosoziale Medizin > > Klinik für Allgemeine Psychiatrie > > Sektion für Gerontopsychiatrie > > Voßstr. 4 > > 69115 Heidelberg > > Tel.: +49 (0) 6221 - 56 7578 > > Email: iven.fellha...@med.uni-heidelberg.de > > > > > The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
