How does the aparc+aseg.mgz look? Bruce Fischl wrote: > Not sure then. Krish: can you take a look? > > On Tue, 25 May 2010, Elias Kersten wrote: > > >> I loaded in lh.white and rh.white and the white and pial surfaces look >> fine, as does the aseg.mgz. >> >> Thanks, >> Elias >> >> On Tue, 2010-05-25 at 09:08 -0400, Bruce Fischl wrote: >> >>> Hi Elias, >>> >>> have you looked at the surfaces? Are they correct? >>> >>> Bruce >>> On Mon, 24 May 2010, >>> Elias Kersten wrote: >>> >>> >>>> Hi, >>>> >>>> I am trying to run a subject through the entire recon-all pipeline. >>>> However, I noticed the second to last step, "-wmparc", was taking a very >>>> long time (days). >>>> >>>> Looking over the data, the aparc+aseg.mgz file is almost all labeled as >>>> "Left-Cerebral-White-Matter", including the background. Also, the >>>> lh.ribbon.mgz file appears like a series of speckles, while the >>>> rh.ribbon.mgz file looks normal. >>>> >>>> I'm not sure where this problem is originating from or what my next >>>> steps should be. Any suggestions? >>>> >>>> Thanks, >>>> Elias >>>> >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>>> >>>> >>> The information in this e-mail is intended only for the person to whom it is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you in >>> error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >>> >>> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > >
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
