Not sure then. Krish: can you take a look? On Tue, 25 May 2010, Elias Kersten wrote:
> I loaded in lh.white and rh.white and the white and pial surfaces look > fine, as does the aseg.mgz. > > Thanks, > Elias > > On Tue, 2010-05-25 at 09:08 -0400, Bruce Fischl wrote: >> Hi Elias, >> >> have you looked at the surfaces? Are they correct? >> >> Bruce >> On Mon, 24 May 2010, >> Elias Kersten wrote: >> >>> Hi, >>> >>> I am trying to run a subject through the entire recon-all pipeline. >>> However, I noticed the second to last step, "-wmparc", was taking a very >>> long time (days). >>> >>> Looking over the data, the aparc+aseg.mgz file is almost all labeled as >>> "Left-Cerebral-White-Matter", including the background. Also, the >>> lh.ribbon.mgz file appears like a series of speckles, while the >>> rh.ribbon.mgz file looks normal. >>> >>> I'm not sure where this problem is originating from or what my next >>> steps should be. Any suggestions? >>> >>> Thanks, >>> Elias >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
