I loaded in lh.white and rh.white and the white and pial surfaces look fine, as does the aseg.mgz.
Thanks, Elias On Tue, 2010-05-25 at 09:08 -0400, Bruce Fischl wrote: > Hi Elias, > > have you looked at the surfaces? Are they correct? > > Bruce > On Mon, 24 May 2010, > Elias Kersten wrote: > > > Hi, > > > > I am trying to run a subject through the entire recon-all pipeline. > > However, I noticed the second to last step, "-wmparc", was taking a very > > long time (days). > > > > Looking over the data, the aparc+aseg.mgz file is almost all labeled as > > "Left-Cerebral-White-Matter", including the background. Also, the > > lh.ribbon.mgz file appears like a series of speckles, while the > > rh.ribbon.mgz file looks normal. > > > > I'm not sure where this problem is originating from or what my next > > steps should be. Any suggestions? > > > > Thanks, > > Elias > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
