Hi Elias, have you looked at the surfaces? Are they correct?
Bruce On Mon, 24 May 2010, Elias Kersten wrote: > Hi, > > I am trying to run a subject through the entire recon-all pipeline. > However, I noticed the second to last step, "-wmparc", was taking a very > long time (days). > > Looking over the data, the aparc+aseg.mgz file is almost all labeled as > "Left-Cerebral-White-Matter", including the background. Also, the > lh.ribbon.mgz file appears like a series of speckles, while the > rh.ribbon.mgz file looks normal. > > I'm not sure where this problem is originating from or what my next > steps should be. Any suggestions? > > Thanks, > Elias > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
