Hi Martin,
there are probably some files it wants to see early in the stream that
didn't exist in 2006. I think the only cure is to string together the
individual commands you want to run (you can find them in the recon-all
help).
cheers,
Bruce
On Tue, 12 May 2009, Martin Kavec wrote:
Hi Bruce,
-make all is not really helping; recon-all starts from the beginning. However,
in these subjects I did not run the whole pipeline. In fact, here is what I
did with the subjects: in 2006: recon-all -all, and in 2009:
recon-all -autorecon2 -autorecon3, where the autorecon3 failed. It seems
that -make all wants to run the whole pipeline, because in 2009 I ran only
autorecon2 and autorecon3. I also tried -make autorecon3, which still tried
to run the whole pipeline.
Would you have any cure for this situation?
Thanks,
Martin
On Sunday 10 May 2009 22:07:58 Bruce Fischl wrote:
Hi Martin,
-make all is what we would suggest. Is there any reason the timestamps
would be wrong on your files to make make all rebuild everything?
cheers,
Bruce
On Sun, 10
May 2009, Martin Kavec wrote:
Hi,
I have a bunch of analyzes (about 30), for which recon-all -all
terminates prematurely at mris_volmask (and core is created). On one case
I ran the mris_volmask and the rest of analysis by executing commands
manually, which went fine, but it's laborious. Is there quicker way to
complete the recon-all -all without need to go over the whole
-autorecon3? ( for some reasons -make all starts the whole analysis over,
which is not really necessary).
Thanks in advance,
Martin
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