Hi Bruce, -make all is not really helping; recon-all starts from the beginning. However, in these subjects I did not run the whole pipeline. In fact, here is what I did with the subjects: in 2006: recon-all -all, and in 2009: recon-all -autorecon2 -autorecon3, where the autorecon3 failed. It seems that -make all wants to run the whole pipeline, because in 2009 I ran only autorecon2 and autorecon3. I also tried -make autorecon3, which still tried to run the whole pipeline.
Would you have any cure for this situation? Thanks, Martin On Sunday 10 May 2009 22:07:58 Bruce Fischl wrote: > Hi Martin, > > -make all is what we would suggest. Is there any reason the timestamps > would be wrong on your files to make make all rebuild everything? > > cheers, > Bruce > On Sun, 10 > > May 2009, Martin Kavec wrote: > > Hi, > > > > I have a bunch of analyzes (about 30), for which recon-all -all > > terminates prematurely at mris_volmask (and core is created). On one case > > I ran the mris_volmask and the rest of analysis by executing commands > > manually, which went fine, but it's laborious. Is there quicker way to > > complete the recon-all -all without need to go over the whole > > -autorecon3? ( for some reasons -make all starts the whole analysis over, > > which is not really necessary). > > > > Thanks in advance, > > > > Martin > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
