Actually, I do have the fwhm.dat file... I was just commenting on how obvious that should have been to me! Thanks, though! - Jerry
On Fri, Apr 18, 2008 at 10:56 AM, Pratap Kunwar <[EMAIL PROTECTED]> wrote: > Jerry, > > can you post your command lines and log file? there should be fwhm.dat > along with the y.fsgd. > > > How did I miss that??? > > Thanks! > > - Jerry > > > > On Thu, Apr 17, 2008 at 3:01 PM, Doug Greve <[EMAIL PROTECTED]> > > wrote: > > > >> there should be a fwhm.dat file in the output. > >> > >> doug > >> > >> > >> Jerry Yeou-Wei Chen wrote: > >> > >> Hello, > >> > >> I have a question regarding performing Monte Carlo simulations when a > >> custom design matrix is being used. > >> The wiki says that "For both MC simulations, you must supply the > >> smoothness of your data as Full-Width/Half-Max (FWHM) of the residual. > >> This > >> can be obtained from the ResidualFWHM value in y.fsgd in the glm output > >> directory." > >> If I understand correctly, this means that the --fwhm flag should be > >> specified when running mri_glmfit to generate CSD's... However, when > >> running > >> a custom design matrix, the y.fsgd file is not generated (since the > >> --fsgd > >> flag cannot be specified at the same time as --X). > >> So, my question is: how do I get the required FWHM value? > >> > >> Thanks, > >> - Jerry > >> > >> ------------------------------ > >> > >> _______________________________________________ > >> Freesurfer mailing > >> [EMAIL PROTECTED]:// > mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> > >> > >> -- > >> Douglas N. Greve, Ph.D. > >> MGH-NMR [EMAIL PROTECTED] > >> Phone Number: 617-724-2358 > >> Fax: 617-726-7422 > >> > >> In order to help us help you, please follow the steps > >> in:surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > >> > >> > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
