Jerry, can you post your command lines and log file? there should be fwhm.dat along with the y.fsgd.
> How did I miss that??? > Thanks! > - Jerry > > On Thu, Apr 17, 2008 at 3:01 PM, Doug Greve <[EMAIL PROTECTED]> > wrote: > >> there should be a fwhm.dat file in the output. >> >> doug >> >> >> Jerry Yeou-Wei Chen wrote: >> >> Hello, >> >> I have a question regarding performing Monte Carlo simulations when a >> custom design matrix is being used. >> The wiki says that "For both MC simulations, you must supply the >> smoothness of your data as Full-Width/Half-Max (FWHM) of the residual. >> This >> can be obtained from the ResidualFWHM value in y.fsgd in the glm output >> directory." >> If I understand correctly, this means that the --fwhm flag should be >> specified when running mri_glmfit to generate CSD's... However, when >> running >> a custom design matrix, the y.fsgd file is not generated (since the >> --fsgd >> flag cannot be specified at the same time as --X). >> So, my question is: how do I get the required FWHM value? >> >> Thanks, >> - Jerry >> >> ------------------------------ >> >> _______________________________________________ >> Freesurfer mailing >> [EMAIL PROTECTED]://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR [EMAIL PROTECTED] >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> In order to help us help you, please follow the steps >> in:surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
