there should be a fwhm.dat file in the output.
doug
Jerry Yeou-Wei Chen wrote:
Hello,
I have a question regarding performing Monte Carlo simulations when a
custom design matrix is being used.
The wiki says that "For both MC simulations, you must supply the
smoothness of your data as Full-Width/Half-Max (FWHM) of the residual.
This can be obtained from the ResidualFWHM value in y.fsgd in the glm
output directory."
If I understand correctly, this means that the --fwhm flag should be
specified when running mri_glmfit to generate CSD's... However, when
running a custom design matrix, the y.fsgd file is not generated
(since the --fsgd flag cannot be specified at the same time as --X).
So, my question is: how do I get the required FWHM value?
Thanks,
- Jerry
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