Thanks for the answer. The problem comes from my original analyze file,
not from the conversion or recon_all.
Olivier
Doug Greve a écrit :
It does not require neurological/radiological. It only requres that
the geometry in the input file be accurate. Is it? You can test it by
viewing it in tkmedit.
doug
Olivier Coulon wrote:
Doug Greve a écrit :
How do you know it is left-right swapped? What tool are you using to
visualize it? Do you have a fiducial?
Hello,
the surface reconstruction (visualised with scuba) gave a left
hemisphere that should be the right one (I am using icbm data that
have also been processed by other softwares so I could compare). Now
thinking about it I realise that the problem could be other than the
file conversion. Does recon_all expect a particular convention (i.e.
neurological/radiological) ?
Thanks,
Olivier
Olivier Coulon wrote:
Hi everyone,
but then, when I do mri_convert -it analyze -i subject -o
subject.mgz,
the volume is shifted to one side (in addition to left/right
swapped).
If you look at the coronal sections I'm attaching, you see that a
piece of ear the right ear is appearing at the left.
I also have this problem of left/right inversion and I cannot
figure out why this happens. Do we have to specify a
--out_orientation string ?
Thanks,
Olivier
--
---------------------------------------------------------------
Olivier Coulon, Chargé de Recherche CNRS
Laboratoire LSIS, UMR CNRS 6168
Equipe I&M, ESIL
Campus de Luminy - Case 925,
13288 Marseille cedex 09 - France
Tél: +33 (0)4 91 82 85 27 Fax: +33 (0)4 91 82 85 51
email: [EMAIL PROTECTED]
http://olivier.coulon.perso.univmed.fr
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