It does not require neurological/radiological. It only requres that the
geometry in the input file be accurate. Is it? You can test it by
viewing it in tkmedit.
doug
Olivier Coulon wrote:
Doug Greve a écrit :
How do you know it is left-right swapped? What tool are you using to
visualize it? Do you have a fiducial?
Hello,
the surface reconstruction (visualised with scuba) gave a left
hemisphere that should be the right one (I am using icbm data that
have also been processed by other softwares so I could compare). Now
thinking about it I realise that the problem could be other than the
file conversion. Does recon_all expect a particular convention (i.e.
neurological/radiological) ?
Thanks,
Olivier
Olivier Coulon wrote:
Hi everyone,
but then, when I do mri_convert -it analyze -i subject -o
subject.mgz,
the volume is shifted to one side (in addition to left/right
swapped).
If you look at the coronal sections I'm attaching, you see that a
piece of ear the right ear is appearing at the left.
I also have this problem of left/right inversion and I cannot figure
out why this happens. Do we have to specify a --out_orientation
string ?
Thanks,
Olivier
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
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Fax: 617-726-7422
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