How do you know it is left-right swapped? What tool are you using to
visualize it? Do you have a fiducial?
Olivier Coulon wrote:
Hi everyone,
but then, when I do mri_convert -it analyze -i subject -o subject.mgz,
the volume is shifted to one side (in addition to left/right swapped).
If you look at the coronal sections I'm attaching, you see that a
piece of ear the right ear is appearing at the left.
I also have this problem of left/right inversion and I cannot figure
out why this happens. Do we have to specify a --out_orientation string ?
Thanks,
Olivier
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