There is one more thing which I didn't mention before, which can have some 
influence of the build-result:

The Xilinx ISE 12.4 version for Windows which I am using is a copy which I got 
from the university's engineer. However, if I want to use all of the Xilinx 
functins, I have to connect to a school server by using VPN client in order to 
have the access to a Xilinx license. 

I am constantly connected to this server via VPN while I am trying to build my 
project, but since I am using the command promt for it, I am not sure that the 
Xilinx is "aware" of this.

Could this be the problem/one of them?

Thanks!

-Nemanja 
                                          
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