On Wed, 26 May, 2021, 1:21 pm Andreas Tille, <andr...@an3as.eu> wrote:
> Hi Nilesh, > > On Wed, May 26, 2021 at 03:22:21AM +0530, Nilesh Patra wrote: > > > I've commited some changes to ont-fast5-api. When I try to run any > > > of the scripts installed into the package I get: > > > > > > pkg_resources.DistributionNotFound: The 'progressbar33>=2.3.1' > distribution was not found and is required by ont-fast5-api > > > > I fixed this one, and pushed to salsa. It builds, tests run and looks > usable. > > Thanks for this. > > > However, one problem - I'm being verbose so we are in loop: > > > > - This package had .so files vendored in ont_fast5_api/vbz_plugin/* -- > this is a violation, and hence you repacked it - see this[1] > > - The so files it had, are basically the shared object files that > libvbz-hdf-plugin vendors, and that was why we packaged it > > - *Now*, we need to somehow tell this package to find the .so files at > the right location > > > > I did not manage to do that, so I simply ended up symlinking the .so > vendored by libvbz-hdf-plugin in that directory. This looks like a bad > workaround, > > and hence if you have some way to fixup paths, please have a look. > > The bad change I'm talking about is this one[2] > > I see what you mean after disabling this hack locally. I need to admit > that I have no idea how to do this properly. I would recommend to ask > at debian-mentors and/or debian-python list whether someone might have a > better understanding where Python is seeking for *.so plugins. > Admittedly, I wouldn't have much time in the coming days to do mail/ask around - real life is taking over. Would you mind asking/seeking help around for how to do this properly? I'd be really happy if you could finalise this and upload as well. Apologies if this is too much hassle. > [1]: > https://salsa.debian.org/med-team/ont-fast5-api/-/commit/097a79d489062b82c6b3abfc45a970bee59893de > > [2]: > https://salsa.debian.org/med-team/ont-fast5-api/-/commit/eb74a43929768ab0455f549919df2c5a6607525d Nilesh > >
