>I have a small complex, one component is 13 kDa with structure available
and the other is 7 kDa, which could not be able to grew crystals after lots
of efforts. It grew crystals after methylation and diffracted to 2.3 A,
however, I could not be able to solve the structure using the structure of
the big component as a template for molecular replacement, and heavy atoms
soaking was not successful. I plan to do selenomethionine expression next.
Does the methylation change protein structures a lot? otherwise, why does
molecular replacement not work?  I would much appreciate any idea and
suggestions how to solve the structure using the data and the template
avaliable.

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A couple of questions that I would consider in regards to the molecular
replacement not working:

Is the binding between the proteins 1:1?  
Does the Matthews coefficient reflect this?

MR maybe difficult if you have a number of 7 kDa proteins binding to a 13
kDa protein.

Hope that Helps,

Sean

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