Hi again, I just tried building afresh -> svn co, autogen, configure, make. And it failed at the same point as before: >>> CCLD ompi_info >>> ../../../ompi/.libs/libmpi.so: undefined reference to `opal_atomic_swap_64'
Any more ideas/fixes? Thanks all. Abhinav. On Fri, Mar 2, 2012 at 8:14 AM, Abhinav Sarje <asa...@lbl.gov> wrote: > yes, I did a full autogen, configure, make clean and make all > > > On Thu, Mar 1, 2012 at 10:03 PM, Jeffrey Squyres <jsquy...@cisco.com> wrote: >> Did you do a full autogen / configure / make clean / make all ? >> >> >> On Mar 1, 2012, at 8:53 AM, Abhinav Sarje wrote: >> >>> Thanks Ralph. That did help, but only till the next hurdle. Now the >>> build fails at the following point with an 'undefined reference': >>> ----------- >>> Making all in tools/ompi_info >>> make[2]: Entering directory >>> `/global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi/tools/ompi_info' >>> CC ompi_info.o >>> CC output.o >>> CC param.o >>> CC components.o >>> CC version.o >>> CCLD ompi_info >>> ../../../ompi/.libs/libmpi.so: undefined reference to `opal_atomic_swap_64' >>> make[2]: *** [ompi_info] Error 2 >>> make[2]: Leaving directory >>> `/global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi/tools/ompi_info' >>> make[1]: *** [all-recursive] Error 1 >>> make[1]: Leaving directory >>> `/global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi' >>> make: *** [all-recursive] Error 1 >>> ----------- >>> >>> >>> >>> >>> >>> >>> On Thu, Mar 1, 2012 at 5:25 PM, Ralph Castain <r...@open-mpi.org> wrote: >>>> You need to update your source code - this was identified and fixed on >>>> Wed. Unfortunately, our trunk is a developer's environment. While we try >>>> hard to keep it fully functional, bugs do occasionally work their way into >>>> the code. >>>> >>>> On Mar 1, 2012, at 1:37 AM, Abhinav Sarje wrote: >>>> >>>>> Hi Nathan, >>>>> >>>>> I tried building on an internal login node, and it did not fail at the >>>>> previous point. But, after compiling for a very long time, it failed >>>>> while building libmpi.la, with a multiple definition error: >>>>> ---------- >>>>> ... >>>>> CC mpiext/mpiext.lo >>>>> CC mpi/f77/base/mpi_f77_base_libmpi_f77_base_la-attr_fn_f.lo >>>>> CC >>>>> mpi/f77/base/mpi_f77_base_libmpi_f77_base_la-conversion_fn_null_f.lo >>>>> CC mpi/f77/base/mpi_f77_base_libmpi_f77_base_la-f90_accessors.lo >>>>> CC mpi/f77/base/mpi_f77_base_libmpi_f77_base_la-strings.lo >>>>> CC mpi/f77/base/mpi_f77_base_libmpi_f77_base_la-test_constants_f.lo >>>>> CCLD mpi/f77/base/libmpi_f77_base.la >>>>> CCLD libmpi.la >>>>> mca/fcoll/dynamic/.libs/libmca_fcoll_dynamic.a(fcoll_dynamic_file_write_all.o): >>>>> In function `local_heap_sort': >>>>> /global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi/mca/fcoll/dynamic/../../../../../ompi/mca/fcoll/dynamic/fcoll_dynamic_file_write_all.c:1111: >>>>> multiple definition of `local_heap_sort' >>>>> mca/fcoll/static/.libs/libmca_fcoll_static.a(fcoll_static_file_write_all.o):/global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi/mca/fcoll/static/../../../../../ompi/mca/fcoll/static/fcoll_static_file_write_all.c:929: >>>>> first defined here >>>>> make[2]: *** [libmpi.la] Error 2 >>>>> make[2]: Leaving directory >>>>> `/global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi' >>>>> make[1]: *** [all-recursive] Error 1 >>>>> make[1]: Leaving directory >>>>> `/global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi' >>>>> make: *** [all-recursive] Error 1 >>>>> ---------- >>>>> >>>>> Any idea why this is happening, and how to fix it? Again, I am using >>>>> the XE6 platform configuration file. >>>>> >>>>> Abhinav. >>>>> >>>>> On Wed, Feb 29, 2012 at 12:13 AM, Nathan Hjelm <hje...@lanl.gov> wrote: >>>>>> >>>>>> >>>>>> On Mon, 27 Feb 2012, Abhinav Sarje wrote: >>>>>> >>>>>>> Hi Nathan, Gus, Manju, >>>>>>> >>>>>>> I got a chance to try out the XE6 support build, but with no success. >>>>>>> First I was getting this error: "PGC-F-0010-File write error occurred >>>>>>> (temporary pragma .s file)". After searching online about this error, >>>>>>> I saw that there is a patch at >>>>>>> >>>>>>> "https://svn.open-mpi.org/trac/ompi/attachment/ticket/2913/openmpi-trunk-ident_string.patch"; >>>>>>> for this particular error. >>>>>>> >>>>>>> With the patched version, I did not get this error anymore, but got >>>>>>> the unknown switch flag error for the flag "-march=amdfam10" >>>>>>> (specified in the XE6 configuration in the dev trunk) at a particular >>>>>>> point even if I use the '-noswitcherror' flag with the pgcc compiler. >>>>>>> >>>>>>> If I remove this flag (-march=amdfam10), the build fails later at the >>>>>>> following point: >>>>>>> ------------------------- >>>>>>> Making all in mca/ras/alps >>>>>>> make[2]: Entering directory >>>>>>> `/{mydir}/openmpi-dev-trunk/build/orte/mca/ras/alps' >>>>>>> CC ras_alps_component.lo >>>>>>> CC ras_alps_module.lo >>>>>>> PGC-F-0206-Can't find include file alps/apInfo.h >>>>>>> (../../../../../orte/mca/ras/alps/ras_alps_module.c: 37) >>>>>>> PGC/x86-64 Linux 11.10-0: compilation aborted >>>>>>> make[2]: *** [ras_alps_module.lo] Error 1 >>>>>>> make[2]: Leaving directory >>>>>>> `/{mydir}/openmpi-dev-trunk/build/orte/mca/ras/alps' >>>>>>> make[1]: *** [all-recursive] Error 1 >>>>>>> make[1]: Leaving directory `/{mydir}/openmpi-dev-trunk/build/orte' >>>>>>> make: *** [all-recursive] Error 1 >>>>>>> -------------------------- >>>>>> >>>>>> >>>>>> This is a known issue with Cray's frontend environment. Build on one of >>>>>> the >>>>>> internal login nodes. >>>>>> >>>>>> >>>>>> -Nathan >>>>>> >>>>>> _______________________________________________ >>>>>> users mailing list >>>>>> us...@open-mpi.org >>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users >>>>> >>>>> _______________________________________________ >>>>> users mailing list >>>>> us...@open-mpi.org >>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users >>>> >>>> >>>> _______________________________________________ >>>> users mailing list >>>> us...@open-mpi.org >>>> http://www.open-mpi.org/mailman/listinfo.cgi/users >>> >>> _______________________________________________ >>> users mailing list >>> us...@open-mpi.org >>> http://www.open-mpi.org/mailman/listinfo.cgi/users >> >> >> -- >> Jeff Squyres >> jsquy...@cisco.com >> For corporate legal information go to: >> http://www.cisco.com/web/about/doing_business/legal/cri/ >> >> >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/users
