Hi, I am trying to compile 64 bits.
On Fri, Mar 2, 2012 at 11:48 PM, George Bosilca <bosi...@eecs.utk.edu> wrote:
> Something is definitively weird in your compilation environment.
>
> The "undefined" function is defined in atomic_impl.h as a static inline
> (static inline int64_t opal_atomic_swap_64(volatile int64_t *addr,…). So
> either the compiler should have complained during compilation, or it should
> be inlined when you reach the linking step. Or, and this is the unusual part,
> you're compiling 32 bits only (thus no atomic 64 bits are available), and we
> are forcing atomic operations on a 64 bits value. That would be quite strange
> …
>
> Are you trying to compile 32 or 64 bits?
>
> george.
>
> On Mar 2, 2012, at 06:12 , Jeffrey Squyres wrote:
>
>> I'm going to have to defer this to those who regularly build on Crays...
>>
>> Sandia / LANL?
>>
>>
>> On Mar 2, 2012, at 12:12 AM, Abhinav Sarje wrote:
>>
>>> Hi again,
>>>
>>> I just tried building afresh -> svn co, autogen, configure, make. And
>>> it failed at the same point as before:
>>>>>> CCLD ompi_info
>>>>>> ../../../ompi/.libs/libmpi.so: undefined reference to
>>>>>> `opal_atomic_swap_64'
>>>
>>> Any more ideas/fixes?
>>>
>>> Thanks all.
>>> Abhinav.
>>>
>>> On Fri, Mar 2, 2012 at 8:14 AM, Abhinav Sarje <asa...@lbl.gov> wrote:
>>>> yes, I did a full autogen, configure, make clean and make all
>>>>
>>>>
>>>> On Thu, Mar 1, 2012 at 10:03 PM, Jeffrey Squyres <jsquy...@cisco.com>
>>>> wrote:
>>>>> Did you do a full autogen / configure / make clean / make all ?
>>>>>
>>>>>
>>>>> On Mar 1, 2012, at 8:53 AM, Abhinav Sarje wrote:
>>>>>
>>>>>> Thanks Ralph. That did help, but only till the next hurdle. Now the
>>>>>> build fails at the following point with an 'undefined reference':
>>>>>> -----------
>>>>>> Making all in tools/ompi_info
>>>>>> make[2]: Entering directory
>>>>>> `/global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi/tools/ompi_info'
>>>>>> CC ompi_info.o
>>>>>> CC output.o
>>>>>> CC param.o
>>>>>> CC components.o
>>>>>> CC version.o
>>>>>> CCLD ompi_info
>>>>>> ../../../ompi/.libs/libmpi.so: undefined reference to
>>>>>> `opal_atomic_swap_64'
>>>>>> make[2]: *** [ompi_info] Error 2
>>>>>> make[2]: Leaving directory
>>>>>> `/global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi/tools/ompi_info'
>>>>>> make[1]: *** [all-recursive] Error 1
>>>>>> make[1]: Leaving directory
>>>>>> `/global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi'
>>>>>> make: *** [all-recursive] Error 1
>>>>>> -----------
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> On Thu, Mar 1, 2012 at 5:25 PM, Ralph Castain <r...@open-mpi.org> wrote:
>>>>>>> You need to update your source code - this was identified and fixed on
>>>>>>> Wed. Unfortunately, our trunk is a developer's environment. While we
>>>>>>> try hard to keep it fully functional, bugs do occasionally work their
>>>>>>> way into the code.
>>>>>>>
>>>>>>> On Mar 1, 2012, at 1:37 AM, Abhinav Sarje wrote:
>>>>>>>
>>>>>>>> Hi Nathan,
>>>>>>>>
>>>>>>>> I tried building on an internal login node, and it did not fail at the
>>>>>>>> previous point. But, after compiling for a very long time, it failed
>>>>>>>> while building libmpi.la, with a multiple definition error:
>>>>>>>> ----------
>>>>>>>> ...
>>>>>>>> CC mpiext/mpiext.lo
>>>>>>>> CC mpi/f77/base/mpi_f77_base_libmpi_f77_base_la-attr_fn_f.lo
>>>>>>>> CC
>>>>>>>> mpi/f77/base/mpi_f77_base_libmpi_f77_base_la-conversion_fn_null_f.lo
>>>>>>>> CC mpi/f77/base/mpi_f77_base_libmpi_f77_base_la-f90_accessors.lo
>>>>>>>> CC mpi/f77/base/mpi_f77_base_libmpi_f77_base_la-strings.lo
>>>>>>>> CC mpi/f77/base/mpi_f77_base_libmpi_f77_base_la-test_constants_f.lo
>>>>>>>> CCLD mpi/f77/base/libmpi_f77_base.la
>>>>>>>> CCLD libmpi.la
>>>>>>>> mca/fcoll/dynamic/.libs/libmca_fcoll_dynamic.a(fcoll_dynamic_file_write_all.o):
>>>>>>>> In function `local_heap_sort':
>>>>>>>> /global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi/mca/fcoll/dynamic/../../../../../ompi/mca/fcoll/dynamic/fcoll_dynamic_file_write_all.c:1111:
>>>>>>>> multiple definition of `local_heap_sort'
>>>>>>>> mca/fcoll/static/.libs/libmca_fcoll_static.a(fcoll_static_file_write_all.o):/global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi/mca/fcoll/static/../../../../../ompi/mca/fcoll/static/fcoll_static_file_write_all.c:929:
>>>>>>>> first defined here
>>>>>>>> make[2]: *** [libmpi.la] Error 2
>>>>>>>> make[2]: Leaving directory
>>>>>>>> `/global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi'
>>>>>>>> make[1]: *** [all-recursive] Error 1
>>>>>>>> make[1]: Leaving directory
>>>>>>>> `/global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi'
>>>>>>>> make: *** [all-recursive] Error 1
>>>>>>>> ----------
>>>>>>>>
>>>>>>>> Any idea why this is happening, and how to fix it? Again, I am using
>>>>>>>> the XE6 platform configuration file.
>>>>>>>>
>>>>>>>> Abhinav.
>>>>>>>>
>>>>>>>> On Wed, Feb 29, 2012 at 12:13 AM, Nathan Hjelm <hje...@lanl.gov> wrote:
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> On Mon, 27 Feb 2012, Abhinav Sarje wrote:
>>>>>>>>>
>>>>>>>>>> Hi Nathan, Gus, Manju,
>>>>>>>>>>
>>>>>>>>>> I got a chance to try out the XE6 support build, but with no success.
>>>>>>>>>> First I was getting this error: "PGC-F-0010-File write error occurred
>>>>>>>>>> (temporary pragma .s file)". After searching online about this error,
>>>>>>>>>> I saw that there is a patch at
>>>>>>>>>>
>>>>>>>>>> "https://svn.open-mpi.org/trac/ompi/attachment/ticket/2913/openmpi-trunk-ident_string.patch";
>>>>>>>>>> for this particular error.
>>>>>>>>>>
>>>>>>>>>> With the patched version, I did not get this error anymore, but got
>>>>>>>>>> the unknown switch flag error for the flag "-march=amdfam10"
>>>>>>>>>> (specified in the XE6 configuration in the dev trunk) at a particular
>>>>>>>>>> point even if I use the '-noswitcherror' flag with the pgcc compiler.
>>>>>>>>>>
>>>>>>>>>> If I remove this flag (-march=amdfam10), the build fails later at the
>>>>>>>>>> following point:
>>>>>>>>>> -------------------------
>>>>>>>>>> Making all in mca/ras/alps
>>>>>>>>>> make[2]: Entering directory
>>>>>>>>>> `/{mydir}/openmpi-dev-trunk/build/orte/mca/ras/alps'
>>>>>>>>>> CC ras_alps_component.lo
>>>>>>>>>> CC ras_alps_module.lo
>>>>>>>>>> PGC-F-0206-Can't find include file alps/apInfo.h
>>>>>>>>>> (../../../../../orte/mca/ras/alps/ras_alps_module.c: 37)
>>>>>>>>>> PGC/x86-64 Linux 11.10-0: compilation aborted
>>>>>>>>>> make[2]: *** [ras_alps_module.lo] Error 1
>>>>>>>>>> make[2]: Leaving directory
>>>>>>>>>> `/{mydir}/openmpi-dev-trunk/build/orte/mca/ras/alps'
>>>>>>>>>> make[1]: *** [all-recursive] Error 1
>>>>>>>>>> make[1]: Leaving directory `/{mydir}/openmpi-dev-trunk/build/orte'
>>>>>>>>>> make: *** [all-recursive] Error 1
>>>>>>>>>> --------------------------
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> This is a known issue with Cray's frontend environment. Build on one
>>>>>>>>> of the
>>>>>>>>> internal login nodes.
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> -Nathan
>>>>>>>>>
>>>>>>>>> _______________________________________________
>>>>>>>>> users mailing list
>>>>>>>>> us...@open-mpi.org
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>>>>>>>>
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>>>>>>>
>>>>>>>
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>>>>>>
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>>>>>
>>>>>
>>>>> --
>>>>> Jeff Squyres
>>>>> jsquy...@cisco.com
>>>>> For corporate legal information go to:
>>>>> http://www.cisco.com/web/about/doing_business/legal/cri/
>>>>>
>>>>>
>>>>> _______________________________________________
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>>>
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>>
>>
>> --
>> Jeff Squyres
>> jsquy...@cisco.com
>> For corporate legal information go to:
>> http://www.cisco.com/web/about/doing_business/legal/cri/
>>
>>
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>
>
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