Looks like you need to add --with-alps=<path to alps> to your configure line.
On Feb 27, 2012, at 10:29 PM, Abhinav Sarje wrote: > Hi Nathan, Gus, Manju, > > I got a chance to try out the XE6 support build, but with no success. > First I was getting this error: "PGC-F-0010-File write error occurred > (temporary pragma .s file)". After searching online about this error, > I saw that there is a patch at > "https://svn.open-mpi.org/trac/ompi/attachment/ticket/2913/openmpi-trunk-ident_string.patch"; > for this particular error. > > With the patched version, I did not get this error anymore, but got > the unknown switch flag error for the flag "-march=amdfam10" > (specified in the XE6 configuration in the dev trunk) at a particular > point even if I use the '-noswitcherror' flag with the pgcc compiler. > > If I remove this flag (-march=amdfam10), the build fails later at the > following point: > ------------------------- > Making all in mca/ras/alps > make[2]: Entering directory > `/{mydir}/openmpi-dev-trunk/build/orte/mca/ras/alps' > CC ras_alps_component.lo > CC ras_alps_module.lo > PGC-F-0206-Can't find include file alps/apInfo.h > (../../../../../orte/mca/ras/alps/ras_alps_module.c: 37) > PGC/x86-64 Linux 11.10-0: compilation aborted > make[2]: *** [ras_alps_module.lo] Error 1 > make[2]: Leaving directory > `/{mydir}/openmpi-dev-trunk/build/orte/mca/ras/alps' > make[1]: *** [all-recursive] Error 1 > make[1]: Leaving directory `/{mydir}/openmpi-dev-trunk/build/orte' > make: *** [all-recursive] Error 1 > -------------------------- > > With this I am out of options to try. I am still using the same > environment: PGI 11.10 compilers, XE6 platform, openmpi dev trunk. > > Any insight would help. > > Thanks, > Abhinav. > > > > On Fri, Feb 17, 2012 at 4:08 AM, Nathan Hjelm <hje...@lanl.gov> wrote: >> contrib/platform/lanl/cray-xe6 is within the Open MPI trunk. It contains >> platform files for an optimized and a debug build (for configure >> --platform). >> >> -Nathan >> >> >> On Thu, 16 Feb 2012, Abhinav Sarje wrote: >> >>> Hi again, >>> >>> Could you tell me the complete path of the svn repo? I think I am >>> missing something there. Also, can I checkout this version >>> anonymously, or do I need a dev account? >>> >>> Thanks, >>> Abhinav. >>> >>> On Thu, Feb 16, 2012 at 11:52 AM, Abhinav Sarje <asa...@lbl.gov> wrote: >>>> >>>> Hi Nathan, >>>> >>>> I had earlier tried to compile OpenMPI with just PGI compilers >>>> (without cray wrapper), but with that my code was not able to run on >>>> the compute nodes of the cray cluster (it just ran on the MOM node). >>>> Therefore I have been trying to compiler OpenMPI with the cray >>>> wrappers. >>>> >>>> I will checkout the cray-xe6 version, and try to follow the instructions. >>>> >>>> Thanks! >>>> Abhinav. >>>> >>>> On Thu, Feb 16, 2012 at 8:31 AM, Nathan Hjelm <hje...@lanl.gov> wrote: >>>>> >>>>> Abhinav, you shouldn't be using the cray wrappers to build Open MPI or >>>>> anything linked against Open MPI. The Cray wrappers will automatically >>>>> include lots of stuff you don't want. Use pgcc, pgcc, or icc directly. >>>>> You >>>>> shouldn't have any trouble running in parallel with either aprun or >>>>> mpirun >>>>> (orterun). >>>>> >>>>> If you haven't already please check out contrib/platform/lanl/cray-xe6 >>>>> to >>>>> see how to build Open MPI with support for the xe6. >>>>> >>>>> -Nathan >>>>> >>>>> >>>>> On Wed, 15 Feb 2012, Abhinav Sarje wrote: >>>>> >>>>>> Hi Gus, >>>>>> >>>>>> I am building using the cray wrappers over the PGI compilers, which >>>>>> gives the errors. I tried building without the cray wrappers, but then >>>>>> it does not run in parallel on the XE6 system I am using. I am going >>>>>> to try the latest nightly build. >>>>>> >>>>>> Abhinav. >>>>>> >>>>>> On Wed, Feb 15, 2012 at 12:22 PM, Gustavo Correa >>>>>> <g...@ldeo.columbia.edu> >>>>>> wrote: >>>>>>> >>>>>>> >>>>>>> >>>>>>> On Feb 15, 2012, at 1:58 PM, Abhinav Sarje wrote: >>>>>>> >>>>>>>> Hi Gus, >>>>>>>> I have not added any flags that include static, but when I do a >>>>>>>> verbose compilation output for the point where error occurs, I see >>>>>>>> that there are some -Bstatic flags. I tried to manually remove the >>>>>>>> -Bstatic included just before the libopen-pal.so library, and that >>>>>>>> particular line then compiled without error. But then while doing >>>>>>>> overall build, the same error occurs at multiple points. >>>>>>>> >>>>>>>> I will try to use the latest nightly tarball and see if it works. >>>>>>>> >>>>>>>> Thanks a lot. >>>>>>>> >>>>>>> >>>>>>> Hi Abhinav >>>>>>> >>>>>>> For what it is worth, I built here OpenMPI 1.4.4 on Linux x86-64 >>>>>>> CentOS >>>>>>> 5.2 [a bit old] >>>>>>> with the PGI 11.7 compilers. >>>>>>> I didn't even use the -noswitcherror switch [which I had to use in >>>>>>> some >>>>>>> of the >>>>>>> previous versions of OpenMPI and PGI]. >>>>>>> >>>>>>> How about forcing the use of shared libraries with -Bdynamic along >>>>>>> with >>>>>>> that -noswitcherror, >>>>>>> in the CC, FC, etc declarations? >>>>>>> >>>>>>> Still, this looks strange, and my guess is that this may be some twist >>>>>>> in >>>>>>> your compiler >>>>>>> installation/configuration. >>>>>>> >>>>>>> But it may come also from the OpenMPI configure script. >>>>>>> Could the OpenMPI configure pick and use the PGI -Bstatic flag, >>>>>>> perhaps? >>>>>>> This type of thing only the developers can tell. >>>>>>> Better hear from them. >>>>>>> >>>>>>> >>>>>>> I hope this helps, >>>>>>> Gus Correa >>>>>>> >>>>>>> >>>>>>> >>>>>>>> Abhinav >>>>>>>> >>>>>>>> On Wed, Feb 15, 2012 at 7:42 AM, Gustavo Correa >>>>>>>> <g...@ldeo.columbia.edu> >>>>>>>> wrote: >>>>>>>>> >>>>>>>>> >>>>>>>>> Hi Abhinav >>>>>>>>> >>>>>>>>> Did you add to your compiler flags -Bstatic [or perhaps -static], >>>>>>>>> or any optimization flags that may include -Bstatic/-static? >>>>>>>>> Check also the compiler configuration, and any possible user >>>>>>>>> customization >>>>>>>>> [~/.mypggcc and friends] to see if -Bstatic is there, maybe >>>>>>>>> inadvertently, and is set by default. >>>>>>>>> That is all I can think of. >>>>>>>>> Maybe it will require Jeff and the Open MPI developers to sort >>>>>>>>> the problem out. >>>>>>>>> >>>>>>>>> Gus Correa >>>>>>>>> >>>>>>>>> On Feb 15, 2012, at 12:19 AM, Abhinav Sarje wrote: >>>>>>>>> >>>>>>>>>> Hi Gus, I had tried with the -noswitcherror flags, which removed >>>>>>>>>> the >>>>>>>>>> 'unknown-switch' error, but then I am still getting the "attempted >>>>>>>>>> static link of dynamic object" error as I reported earlier. >>>>>>>>>> >>>>>>>>>> Thanks. >>>>>>>>>> >>>>>>>>>> On Fri, Feb 10, 2012 at 5:57 AM, Gustavo Correa >>>>>>>>>> <g...@ldeo.columbia.edu> wrote: >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> Hi Abhinav >>>>>>>>>>> >>>>>>>>>>> Setting CC='pgcc --noswitcherror', FC='pgfortran --noswitcherror', >>>>>>>>>>> etc, may prevent the >>>>>>>>>>> error message [but not sure it will prevent any actual and >>>>>>>>>>> unreported >>>>>>>>>>> error]. >>>>>>>>>>> Check details with 'man pgfortran'. >>>>>>>>>>> >>>>>>>>>>> I hope this helps, >>>>>>>>>>> Gus Corea >>>>>>>>>>> >>>>>>>>>>> . >>>>>>>>>>> >>>>>>>>>>> On Feb 10, 2012, at 2:03 AM, Abhinav Sarje wrote: >>>>>>>>>>> >>>>>>>>>>>> I tried with 1.5.4 and same compilers, and got the exact same >>>>>>>>>>>> error. >>>>>>>>>>>> I also tried PGI version 11.10.0, and got the same thing. >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> On Wed, Feb 8, 2012 at 3:04 AM, Jeff Squyres (jsquyres) >>>>>>>>>>>> <jsquy...@cisco.com> wrote: >>>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>> Can you try building 1.5.4 with the same compilers? >>>>>>>>>>>>> >>>>>>>>>>>>> Sent from my phone. No type good. >>>>>>>>>>>>> >>>>>>>>>>>>> On Feb 7, 2012, at 3:14 PM, "Abhinav Sarje" <asa...@lbl.gov> >>>>>>>>>>>>> wrote: >>>>>>>>>>>>> >>>>>>>>>>>>>> I am trying to build open-mpi 1.4.4 (latest stable from >>>>>>>>>>>>>> open-mpi.org) >>>>>>>>>>>>>> using PGI compilers on a cray platform. PGI compilers' version >>>>>>>>>>>>>> is >>>>>>>>>>>>>> 11.9.0. I get the following error while building: >>>>>>>>>>>>>> ------------------------------------- >>>>>>>>>>>>>> Making all in tools/wrappers >>>>>>>>>>>>>> make[2]: Entering directory >>>>>>>>>>>>>> `{my_installation_directory}/opal/tools/wrappers' >>>>>>>>>>>>>> source='opal_wrapper.c' object='opal_wrapper.o' libtool=no \ >>>>>>>>>>>>>> DEPDIR=.deps depmode=none /bin/sh ../../../config/depcomp \ >>>>>>>>>>>>>> cc "-DEXEEXT=\"\"" -I. -I../../../opal/include >>>>>>>>>>>>>> -I../../../orte/include -I../../../ompi/include >>>>>>>>>>>>>> -I../../../opal/mca/paffinity/linux/plpa/src/libplpa >>>>>>>>>>>>>> -I../../.. >>>>>>>>>>>>>> -D_REENTRANT -O -DNDEBUG -fPIC -c -o opal_wrapper.o >>>>>>>>>>>>>> opal_wrapper.c >>>>>>>>>>>>>> /bin/sh ../../../libtool --tag=CC --mode=link cc -O -DNDEBUG >>>>>>>>>>>>>> -fPIC >>>>>>>>>>>>>> -export-dynamic -o opal_wrapper opal_wrapper.o >>>>>>>>>>>>>> ../../../opal/libopen-pal.la -lnsl -lutil >>>>>>>>>>>>>> libtool: link: cc -O -DNDEBUG -fPIC -o .libs/opal_wrapper >>>>>>>>>>>>>> opal_wrapper.o --export-dynamic >>>>>>>>>>>>>> ../../../opal/.libs/libopen-pal.so >>>>>>>>>>>>>> -ldl -lnsl -lutil -rpath {my_installation_directory}/lib >>>>>>>>>>>>>> pgcc-Error-Unknown switch: --export-dynamic >>>>>>>>>>>>>> make[2]: *** [opal_wrapper] Error 1 >>>>>>>>>>>>>> make[2]: Leaving directory >>>>>>>>>>>>>> `{my_installation_directory}/opal/tools/wrappers' >>>>>>>>>>>>>> make[1]: *** [all-recursive] Error 1 >>>>>>>>>>>>>> make[1]: Leaving directory `{my_installation_directory}/opal' >>>>>>>>>>>>>> make: *** [all-recursive] Error 1 >>>>>>>>>>>>>> ------------------------------------- >>>>>>>>>>>>>> >>>>>>>>>>>>>> I see that the libtool packaged with open-mpi is 2.2.6b >>>>>>>>>>>>>> When I try to compile this particular part with libtool >>>>>>>>>>>>>> versions >>>>>>>>>>>>>> 2.2.6 >>>>>>>>>>>>>> or 2.4, I get the following error: >>>>>>>>>>>>>> ------------------------------------- >>>>>>>>>>>>>> $ libtool --tag=CC --mode=link cc -O -DNDEBUG -fPIC >>>>>>>>>>>>>> -export-dynamic -o opal_wrapper opal_wrapper.o >>>>>>>>>>>>>> ../../../opal/libopen-pal.la -lnsl -lutil >>>>>>>>>>>>>> libtool: link: cc -O -DNDEBUG -fPIC -o .libs/opal_wrapper >>>>>>>>>>>>>> opal_wrapper.o -Wl,--export-dynamic >>>>>>>>>>>>>> ../../../opal/.libs/libopen-pal.so -ldl -lnsl -lutil -Wl,-rpath >>>>>>>>>>>>>> -Wl,{my_installation_directory}/lib >>>>>>>>>>>>>> /usr/bin/ld: attempted static link of dynamic object >>>>>>>>>>>>>> `../../../opal/.libs/libopen-pal.so' >>>>>>>>>>>>>> ------------------------------------- >>>>>>>>>>>>>> >>>>>>>>>>>>>> Looking at earlier posts, apparently there was a bug with >>>>>>>>>>>>>> libtool >>>>>>>>>>>>>> a >>>>>>>>>>>>>> couple of years ago because of which the above error occurred. >>>>>>>>>>>>>> This >>>>>>>>>>>>>> was fixed in newer releases, but I am getting similar errors. >>>>>>>>>>>>>> >>>>>>>>>>>>>> Does anyone have any information on how to fix this, or if I am >>>>>>>>>>>>>> doing >>>>>>>>>>>>>> something wrong here? >>>>>>>>>>>>>> >>>>>>>>>>>>>> Thanks! >>>>>>>>>>>>>> _______________________________________________ >>>>>>>>>>>>>> users mailing list >>>>>>>>>>>>>> us...@open-mpi.org >>>>>>>>>>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users >>>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>> _______________________________________________ >>>>>>>>>>>>> users mailing list >>>>>>>>>>>>> us...@open-mpi.org >>>>>>>>>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> _______________________________________________ >>>>>>>>>>>> users mailing list >>>>>>>>>>>> us...@open-mpi.org >>>>>>>>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> _______________________________________________ >>>>>>>>>>> users mailing list >>>>>>>>>>> us...@open-mpi.org >>>>>>>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> _______________________________________________ >>>>>>>>>> users mailing list >>>>>>>>>> us...@open-mpi.org >>>>>>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> _______________________________________________ >>>>>>>>> users mailing list >>>>>>>>> us...@open-mpi.org >>>>>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> _______________________________________________ >>>>>>>> users mailing list >>>>>>>> us...@open-mpi.org >>>>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> _______________________________________________ >>>>>>> users mailing list >>>>>>> us...@open-mpi.org >>>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users >>>>>> >>>>>> >>>>>> >>>>>> _______________________________________________ >>>>>> users mailing list >>>>>> us...@open-mpi.org >>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users >>>>> >>>>> >>>>> >>>>> _______________________________________________ >>>>> users mailing list >>>>> us...@open-mpi.org >>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users >>> >>> >>> _______________________________________________ >>> users mailing list >>> us...@open-mpi.org >>> http://www.open-mpi.org/mailman/listinfo.cgi/users >> >> >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
