Re: [OMPI users] Problem when installing OpenMPI during make all install

2016-02-25 Thread Gilles Gouaillardet
at first glance, you are building OpenMPI with a gcc you compiled by yourself, and that appears busted for example, gnu_dev_major is an extern symbol, so the linker should not complain about it being multiply defined (!) can you simply preprocess a file and post the output, for example cd opal rm

Re: [OMPI users] Problem when installing OpenMPI during make all install

2016-02-25 Thread Tang Cheng Yee
Attached are the log file for ./configure and make all install. I am using the openmpi-1.10.2 Thanks -Original Message- From: users [mailto:users-boun...@open-mpi.org] On Behalf Of Jeff Squyres (jsquyres) Sent: Friday, 26 February, 2016 10:13 AM To: Open MPI User's List Subject: Re: [OM

Re: [OMPI users] Problem when installing OpenMPI during make all install

2016-02-25 Thread Jeff Squyres (jsquyres)
Can you send all the information listed here: https://www.open-mpi.org/community/help/ > On Feb 25, 2016, at 9:09 PM, Tang Cheng Yee wrote: > > Hi all, > > I am new to the bioinformatics world. When I was trying to install OpenMPI, I > encountered the following error during ‘make all in

[OMPI users] Problem when installing OpenMPI during make all install

2016-02-25 Thread Tang Cheng Yee
Hi all, I am new to the bioinformatics world. When I was trying to install OpenMPI, I encountered the following error during 'make all install': class/.libs/opal_bitmap.o:opal_bitmap.c:(.text+0x200): first defined here mca/timer/linux/.libs/libmca_timer_linux.a(timer_linux_component.o): In fun

Re: [OMPI users] Adding a new BTL

2016-02-25 Thread dpchoudh .
Thank you, Jeff. I'll start a new thread on this on the devel list. Durga Life is complex. It has real and imaginary parts. On Thu, Feb 25, 2016 at 5:15 PM, Jeff Squyres (jsquyres) wrote: > Can you send the full output from autogen and configure? > > Also, this is probably better suited for th

Re: [OMPI users] Adding a new BTL

2016-02-25 Thread Jeff Squyres (jsquyres)
Can you send the full output from autogen and configure? Also, this is probably better suited for the Devel list, since we're talking about OMPI internals. Sent from my phone. No type good. On Feb 25, 2016, at 2:06 PM, dpchoudh . mailto:dpcho...@gmail.com>> wrote: Hello Gilles Thank you very

Re: [OMPI users] Adding a new BTL

2016-02-25 Thread dpchoudh .
Hello Gilles Thank you very much for your advice. Yes, I copied the templates from the master branch to the 1.10.2 release, since the release does not have them. And yes, changing the Makefile.am as you suggest did make the autogen error go away. However, in the master branch, the autotools seem

Re: [OMPI users] Adding a new BTL

2016-02-25 Thread Gilles Gouaillardet
Did you copy the template from the master branch into the v1.10 branch ? if so, you need to replacing MCA_BUILD_opal_btl_lf_DSO with MCA_BUILD_ompi_btl_lf_DSO will likely solve your issue. you do need a configure.m4 (otherwise your btl will not be built) but you do not need AC_MSG_FAILURE as far a

[OMPI users] Adding a new BTL

2016-02-25 Thread dpchoudh .
Hello all I am not sure if this question belongs in the user list or the developer list, but because it is a simpler question I am trying the user list first. I am trying to add a new BTL for a proprietary transport. As step #0, I copied the BTL template, renamed the 'template' to something else